|
|
|
Research Papers
Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142, USA.
Abstract
Embryonic stem (ES) cells homozygous for a disruption of the DNA (cytosine-5)-methyltransferase gene (Dnmt) proliferate normally with their DNA highly demethylated but die upon differentiation. Expression of the wild-type Dnmt cDNA in mutant male ES cells caused an increase in methylation of bulk DNA and of the Xist and Igf2 genes to normal levels, but did not restore the methylation of the imprinted genes H19 and Igf2r. These cells differentiated normally in vitro and contributed substantially to adult chimeras. While the Xist gene was not expressed in the remethylated male ES cells, no restoration of the normal expression profile was seen for H19, Igf2r, or Igf2. This indicates that ES cells can faithfully reestablish normal methylation and expression patterns of nonimprinted genes but lack the ability to restore those of imprinted genes. Full restoration of monoallelic methylation and expression was imposed on H19, Igf2, and Igf2r upon germ-line transmission. These results are consistent with the presence of distinct de novo DNA methyltransferase activities during oogenesis and spermatogenesis, which specifically recognize imprinted genes but are absent in the postimplantation embryo and in ES cells.
This article has been cited by other articles:
![]() |
K. M. Kolodziejska, M.H. Noyan-Ashraf, A. Nagy, A. Bacon, J. Frampton, H.-B. Xin, M. I. Kotlikoff, and M. Husain c-Myb-Dependent Smooth Muscle Cell Differentiation Circ. Res., March 14, 2008; 102(5): 554 - 561. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Schermelleh, A. Haemmer, F. Spada, N. Rosing, D. Meilinger, U. Rothbauer, M. C. Cardoso, and H. Leonhardt Dynamics of Dnmt1 interaction with the replication machinery and its role in postreplicative maintenance of DNA methylation Nucleic Acids Res., July 26, 2007; 35(13): 4301 - 4312. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Damelin and T. H. Bestor Biological Functions of DNA Methyltransferase 1 Require Its Methyltransferase Activity Mol. Cell. Biol., June 1, 2007; 27(11): 3891 - 3899. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Oda, A. Yamagiwa, S. Yamamoto, T. Nakayama, A. Tsumura, H. Sasaki, K. Nakao, E. Li, and M. Okano DNA methylation regulates long-range gene silencing of an X-linked homeobox gene cluster in a lineage-specific manner Genes & Dev., December 15, 2006; 20(24): 3382 - 3394. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Savarese, K. Flahndorfer, R. Jaenisch, M. Busslinger, and A. Wutz Hematopoietic precursor cells transiently reestablish permissiveness for x inactivation. Mol. Cell. Biol., October 1, 2006; 26(19): 7167 - 7177. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Arnaud, K. Hata, M. Kaneda, E. Li, H. Sasaki, R. Feil, and G. Kelsey Stochastic imprinting in the progeny of Dnmt3L-/- females Hum. Mol. Genet., February 15, 2006; 15(4): 589 - 598. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Morrow, A. Scheller, Y. A. Birney, C. Sweeney, S. Guha, P. M. Cummins, R. Murphy, D. Walls, E. M. Redmond, and P. A. Cahill Notch-mediated CBF-1/RBP-J{kappa}-dependent regulation of human vascular smooth muscle cell phenotype in vitro Am J Physiol Cell Physiol, November 1, 2005; 289(5): C1188 - C1196. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Yamazaki, E. W. Low, Y. Marikawa, K. Iwahashi, M. S. Bartolomei, J. R. McCarrey, and R. Yanagimachi Adult mice cloned from migrating primordial germ cells PNAS, August 9, 2005; 102(32): 11361 - 11366. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Sha and A. Fire Imprinting Capacity of Gamete Lineages in Caenorhabditis elegans Genetics, August 1, 2005; 170(4): 1633 - 1652. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. L. Carlone, J.-H. Lee, S. R. L. Young, E. Dobrota, J. S. Butler, J. Ruiz, and D. G. Skalnik Reduced Genomic Cytosine Methylation and Defective Cellular Differentiation in Embryonic Stem Cells Lacking CpG Binding Protein Mol. Cell. Biol., June 15, 2005; 25(12): 4881 - 4891. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Jackson, A. Krassowska, N. Gilbert, T. Chevassut, L. Forrester, J. Ansell, and B. Ramsahoye Severe Global DNA Hypomethylation Blocks Differentiation and Induces Histone Hyperacetylation in Embryonic Stem Cells Mol. Cell. Biol., October 15, 2004; 24(20): 8862 - 8871. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Han, W. Xie, S. H. Kim, L. Yue, and J. DeJong A Short Core Promoter Drives Expression of the ALF Transcription Factor in Reproductive Tissues of Male and Female Mice Biol Reprod, September 1, 2004; 71(3): 933 - 941. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. Valinluck, H.-H. Tsai, D. K. Rogstad, A. Burdzy, A. Bird, and L. C. Sowers Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2) Nucleic Acids Res., August 9, 2004; 32(14): 4100 - 4108. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Ventura, A. Meissner, C. P. Dillon, M. McManus, P. A. Sharp, L. Van Parijs, R. Jaenisch, and T. Jacks Cre-lox-regulated conditional RNA interference from transgenes PNAS, July 13, 2004; 101(28): 10380 - 10385. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Santos and W. Dean Epigenetic reprogramming during early development in mammals Reproduction, June 1, 2004; 127(6): 643 - 651. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Schumacher and W. Doerfler Influence of in vitro manipulation on the stability of methylation patterns in the Snurf/Snrpn-imprinting region in mouse embryonic stem cells Nucleic Acids Res., March 5, 2004; 32(4): 1566 - 1576. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Gaudet, W. M. Rideout III, A. Meissner, J. Dausman, H. Leonhardt, and R. Jaenisch Dnmt1 Expression in Pre- and Postimplantation Embryogenesis and the Maintenance of IAP Silencing Mol. Cell. Biol., February 15, 2004; 24(4): 1640 - 1648. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Gaudet, J. G. Hodgson, A. Eden, L. Jackson-Grusby, J. Dausman, J. W. Gray, H. Leonhardt, and R. Jaenisch Induction of Tumors in Mice by Genomic Hypomethylation Science, April 18, 2003; 300(5618): 489 - 492. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. Xin, M. Tachibana, M. Guggiari, E. Heard, Y. Shinkai, and J. Wagstaff Role of Histone Methyltransferase G9a in CpG Methylation of the Prader-Willi Syndrome Imprinting Center J. Biol. Chem., April 18, 2003; 278(17): 14996 - 15000. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Hata, M. Okano, H. Lei, and E. Li Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice Development, March 6, 2003; 129(8): 1983 - 1993. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. E. Szabo, S.-H. E. Tang, M. R. Reed, F. J. Silva, W. M. K. Tsark, and J. R. Mann The chicken {beta}-globin insulator element conveys chromatin boundary activity but not imprinting at the mouse Igf2/H19 domain Development, March 4, 2003; 129(4): 897 - 904. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Kimura and K. Shiota Methyl-CpG-binding Protein, MeCP2, Is a Target Molecule for Maintenance DNA Methyltransferase, Dnmt1 J. Biol. Chem., February 7, 2003; 278(7): 4806 - 4812. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Chedin, M. R. Lieber, and C.-L. Hsieh The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a PNAS, December 24, 2002; 99(26): 16916 - 16921. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Chen, Y. Ueda, S. Xie, and E. Li A Novel Dnmt3a Isoform Produced from an Alternative Promoter Localizes to Euchromatin and Its Expression Correlates with Active de Novo Methylation J. Biol. Chem., October 4, 2002; 277(41): 38746 - 38754. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. N. Trinh, T. I. Long, A. E. Nickel, D. Shibata, and P. W. Laird DNA Methyltransferase Deficiency Modifies Cancer Susceptibility in Mice Lacking DNA Mismatch Repair Mol. Cell. Biol., May 1, 2002; 22(9): 2906 - 2917. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Biniszkiewicz, J. Gribnau, B. Ramsahoye, F. Gaudet, K. Eggan, D. Humpherys, M.-A. Mastrangelo, Z. Jun, J. Walter, and R. Jaenisch Dnmt1 Overexpression Causes Genomic Hypermethylation, Loss of Imprinting, and Embryonic Lethality Mol. Cell. Biol., April 1, 2002; 22(7): 2124 - 2135. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Niwa, S. Masui, I. Chambers, A. G. Smith, and J.-i. Miyazaki Phenotypic Complementation Establishes Requirements for Specific POU Domain and Generic Transactivation Function of Oct-3/4 in Embryonic Stem Cells Mol. Cell. Biol., March 1, 2002; 22(5): 1526 - 1536. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. F. Chan, R. van Amerongen, T. Nijjar, E. Cuppen, P. A. Jones, and P. W. Laird Reduced Rates of Gene Loss, Gene Silencing, and Gene Mutation in Dnmt1-Deficient Embryonic Stem Cells Mol. Cell. Biol., November 15, 2001; 21(22): 7587 - 7600. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. V. Serreze, E. A. Johnson, H. D. Chapman, R. T. Graser, M. P. Marron, T. P. DiLorenzo, P. Silveira, Y. Yoshimura, S. G. Nathenson, and S. Joyce Autoreactive Diabetogenic T-Cells in NOD Mice Can Efficiently Expand From a Greatly Reduced Precursor Pool Diabetes, September 1, 2001; 50(9): 1992 - 2000. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. M. Rideout III, K. Eggan, and R. Jaenisch Nuclear Cloning and Epigenetic Reprogramming of the Genome Science, August 10, 2001; 293(5532): 1093 - 1098. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Humpherys, K. Eggan, H. Akutsu, K. Hochedlinger, W. M. Rideout III, D. Biniszkiewicz, R. Yanagimachi, and R. Jaenisch Epigenetic Instability in ES Cells and Cloned Mice Science, July 6, 2001; 293(5527): 95 - 97. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. R. Mann Imprinting in the Germ Line Stem Cells, July 1, 2001; 19(4): 287 - 294. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. B. Fulmer-Smentek and U. Francke Association of acetylated histones with paternally expressed genes in the Prader-Willi deletion region Hum. Mol. Genet., March 1, 2001; 10(6): 645 - 652. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Fan, C. Beard, R. Z. Chen, G. Csankovszki, Y. Sun, M. Siniaia, D. Biniszkiewicz, B. Bates, P. P. Lee, R. Kuhn, et al. DNA Hypomethylation Perturbs the Function and Survival of CNS Neurons in Postnatal Animals J. Neurosci., February 1, 2001; 21(3): 788 - 797. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Banerjee, S. Lamond, A. McMahon, S. Campbell, and G. Nargund Does blastocyst culture eliminate paternal chromosomal defects and select good embryos?: Inheritance of an abnormal paternal genome following ICSI Hum. Reprod., December 1, 2000; 15(12): 2455 - 2459. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. F. LePage, D. M. Church, E. Millie, T. J. Hassold, and R. A. Conlon Rapid generation of nested chromosomal deletions on mouse chromosome 2 PNAS, September 12, 2000; 97(19): 10471 - 10476. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. H. Ramsahoye, D. Biniszkiewicz, F. Lyko, V. Clark, A. P. Bird, and R. Jaenisch Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a PNAS, May 9, 2000; 97(10): 5237 - 5242. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Endres, A. Meisel, D. Biniszkiewicz, S. Namura, K. Prass, K. Ruscher, A. Lipski, R. Jaenisch, M. A. Moskowitz, and U. Dirnagl DNA Methyltransferase Contributes to Delayed Ischemic Brain Injury J. Neurosci., May 1, 2000; 20(9): 3175 - 3181. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. S. Osborne, P. Pasceri, R. Singal, T. Sukonnik, G. D. Ginder, and J. Ellis Amelioration of Retroviral Vector Silencing in Locus Control Region beta -Globin-Transgenic Mice and Transduced F9 Embryonic Cells J. Virol., July 1, 1999; 73(7): 5490 - 5496. [Abstract] [Full Text] |
||||
![]() |
M. L. Sikes, C. C. Suarez, and E. M. Oltz Regulation of V(D)J Recombination by Transcriptional Promoters Mol. Cell. Biol., April 1, 1999; 19(4): 2773 - 2781. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Kakutani, K. Munakata, E. J. Richards, and H. Hirochika Meiotically and Mitotically Stable Inheritance of DNA Hypomethylation Induced by ddm1 Mutation of Arabidopsis thaliana Genetics, February 1, 1999; 151(2): 831 - 838. [Abstract] [Full Text] |
||||
![]() |
Y Kato, W. Rideout, K Hilton, S. Barton, Y Tsunoda, and M. Surani Developmental potential of mouse primordial germ cells Development, January 5, 1999; 126(9): 1823 - 1832. [Abstract] [PDF] |
||||
![]() |
F. Gaudet, D. Talbot, H. Leonhardt, and R. Jaenisch A Short DNA Methyltransferase Isoform Restores Methylation In Vivo J. Biol. Chem., December 4, 1998; 273(49): 32725 - 32729. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. K. Jones, J. M. Levorse, and S. M. Tilghman Igf2 imprinting does not require its own DNA methylation or H19 RNA Genes & Dev., July 15, 1998; 12(14): 2200 - 2207. [Abstract] [Full Text] |
||||
![]() |
C. Y. Howell, A. L. Steptoe, M. W. Miller, and J. R. Chaillet cis-Acting Signal for Inheritance of Imprinted DNA Methylation Patterns in the Preimplantation Mouse Embryo Mol. Cell. Biol., July 1, 1998; 18(7): 4149 - 4156. [Abstract] [Full Text] |
||||
![]() |
A. L. Webber and S. M. Tilghman The Absence of Enhancer Competition between Igf2 and H19 following Transfer into Differentiated Cells Mol. Cell. Biol., April 1, 1998; 18(4): 1903 - 1910. [Abstract] [Full Text] |
||||
![]() |
J. Ouwendijk, W. J. M. Peters, R. A. van de Vorstenbosch, L. A. Ginsel, H. Y. Naim, and J. A. M. Fransen Routing and Processing of Lactase-Phlorizin Hydrolase in Transfected Caco-2 Cells J. Biol. Chem., March 20, 1998; 273(12): 6650 - 6655. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-F. Hu, H. Oruganti, T. H. Vu, and A. R. Hoffman Tissue-Specific Imprinting of the Mouse Insulin-Like Growth Factor II Receptor Gene Correlates with Differential Allele-Specific DNA Methylation Mol. Endocrinol., February 1, 1998; 12(2): 220 - 232. [Abstract] [Full Text] |
||||
![]() |
W Dean, L Bowden, A Aitchison, J Klose, T Moore, J. Meneses, W Reik, and R Feil Altered imprinted gene methylation and expression in completely ES cell-derived mouse fetuses: association with aberrant phenotypes Development, January 6, 1998; 125(12): 2273 - 2282. [Abstract] [PDF] |
||||
![]() |
R. Shemer, Y. Birger, A. D. Riggs, and A. Razin Structure of the imprinted mouse Snrpn gene and establishment of its parental-specific methylation pattern PNAS, September 16, 1997; 94(19): 10267 - 10272. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-F. Hu, T. H. Vu, and A. R. Hoffman Genomic Deletion of an Imprint Maintenance Element Abolishes Imprinting of Both Insulin-like Growth Factor II and H19 J. Biol. Chem., August 15, 1997; 272(33): 20715 - 20720. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Feil, M. D. Boyano, N. D. Allen, and G. Kelsey Parental Chromosome-specific Chromatin Conformation in the Imprinted U2af1-rs1 Gene in the Mouse J. Biol. Chem., August 15, 1997; 272(33): 20893 - 20900. [Abstract] [Full Text] [PDF] |
||||
![]() |
H Lei, S. Oh, M Okano, R Juttermann, K. Goss, R Jaenisch, and E Li De novo DNA cytosine methyltransferase activities in mouse embryonic stem cells Development, January 10, 1996; 122(10): 3195 - 3205. [Abstract] [PDF] |
||||
![]() |
J. M. G. Higgins, M. Cernadas, K. Tan, A. Irie, J.-h. Wang, Y. Takada, and M. B. Brenner The Role of alpha and beta Chains in Ligand Recognition by beta 7 Integrins J. Biol. Chem., August 11, 2000; 275(33): 25652 - 25664. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Lucarelli, A. Fuso, R. Strom, and S. Scarpa The Dynamics of Myogenin Site-specific Demethylation Is Strongly Correlated with Its Expression and with Muscle Differentiation J. Biol. Chem., March 2, 2001; 276(10): 7500 - 7506. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. El Kharroubi, G. Piras, and C. L. Stewart DNA Demethylation Reactivates a Subset of Imprinted Genes in Uniparental Mouse Embryonic Fibroblasts J. Biol. Chem., March 16, 2001; 276(12): 8674 - 8680. [Abstract] [Full Text] [PDF] |
||||