|
|
|
1 Department of Biology, Indiana University, Bloomington,
Indiana 47405 USA;
2 Molecular and Cell Biology Program, The
University of Texas at Dallas, Richardson, Texas 75083 USA
We have isolated and characterized two suppressor genes,
SUI4 and SUI5, that can initiate translation in the
absence of an AUG start codon at the HIS4 locus in
Saccharomyces cerevisiae. Both suppressor genes are dominant in
diploid cells and lethal in haploid cells. The SUI4 suppressor
gene is identical to the GCD11 gene, which encodes the
subunit of the eIF-2 complex and contains a mutation in the
G2 motif, one of the four signature motifs that characterizes
this subunit to be a G-protein. The SUI5 suppressor gene is
identical to the TIF5 gene that encodes eIF-5, a translation
initiation factor known to stimulate the hydrolysis of GTP bound to
eIF-2 as part of the 43S preinitiation complex. Purified mutant eIF-5
is more active in stimulating GTP hydrolysis in vitro than wild-type
eIF-5, suggesting that an alteration of the hydrolysis rate of GTP
bound to the 43S preinitiation complex during ribosomal scanning allows
translation initiation at a non-AUG codon. Purified mutant eIF-2
complex is defective in ternary complex formation and this defect
correlates with a higher rate of dissociation from charged
initiator-tRNA in the absence of GTP hydrolysis. Biochemical
characterization of SUI3 suppressor alleles that encode mutant
forms of the
subunit of eIF-2 revealed that these mutant eIF-2
complexes have a higher intrinsic rate of GTP hydrolysis, which is
eIF-5 independent. All of these biochemical defects result in
initiation at a UUG codon at the his4 gene in yeast. These
studies in light of other analyses indicate that GTP hydrolysis that
leads to dissociation of eIF-2 · GDP from the initiator-tRNA in
the 43S preinitiation complex serves as a checkpoint for a 3-bp
codon/anticodon interaction between the AUG start codon
and the initiator-tRNA during the ribosomal scanning process.
[Key Words: GTP hydrolysis; translation initiation; ribosomal scanning; AUG selection; eIF-2; eIF-5]
This article has been cited by other articles:
![]() |
E. Spooncer, N. Brouard, S. K. Nilsson, B. Williams, M. C. Liu, R. D. Unwin, D. Blinco, E. Jaworska, P. J. Simmons, and A. D. Whetton Developmental Fate Determination and Marker Discovery in Hematopoietic Stem Cell Biology Using Proteomic Fingerprinting Mol. Cell. Proteomics, March 1, 2008; 7(3): 573 - 581. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Reibarkh, Y. Yamamoto, C. R. Singh, F. del Rio, A. Fahmy, B. Lee, R. E. Luna, M. Ii, G. Wagner, and K. Asano Eukaryotic Initiation Factor (eIF) 1 Carries Two Distinct eIF5-binding Faces Important for Multifactor Assembly and AUG Selection J. Biol. Chem., January 11, 2008; 283(2): 1094 - 1103. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Yatime, Y. Mechulam, S. Blanquet, and E. Schmitt Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states PNAS, November 20, 2007; 104(47): 18445 - 18450. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. S. Mohammad-Qureshi, R. Haddad, E. J. Hemingway, J. P. Richardson, and G. D. Pavitt Critical Contacts between the Eukaryotic Initiation Factor 2B (eIF2B) Catalytic Domain and both eIF2{beta} and -2{gamma} Mediate Guanine Nucleotide Exchange Mol. Cell. Biol., July 15, 2007; 27(14): 5225 - 5234. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Araud, R. Genolet, P. Jaquier-Gubler, and J. Curran Alternatively spliced isoforms of the human elk-1 mRNA within the 5' UTR: implications for ELK-1 expression Nucleic Acids Res., July 9, 2007; 35(14): 4649 - 4663. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Asano and M. S. Sachs Translation factor control of ribosome conformation during start codon selection Genes & Dev., June 1, 2007; 21(11): 1280 - 1287. [Full Text] [PDF] |
||||
![]() |
M. Sokabe, M. Yao, N. Sakai, S. Toya, and I. Tanaka Structure of archaeal translational initiation factor 2 beta{gamma}-GDP reveals significant conformational change of the beta-subunit and switch 1 region PNAS, August 29, 2006; 103(35): 13016 - 13021. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. M. Lancaster, E. Jan, and P. Sarnow Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site RNA, May 1, 2006; 12(5): 894 - 902. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. D. Kapp, S. E. Kolitz, and J. R. Lorsch Yeast initiator tRNA identity elements cooperate to influence multiple steps of translation initiation RNA, May 1, 2006; 12(5): 751 - 764. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Yamamoto, C. R. Singh, A. Marintchev, N. S. Hall, E. M. Hannig, G. Wagner, and K. Asano The eukaryotic initiation factor (eIF) 5 HEAT domain mediates multifactor assembly and scanning with distinct interfaces to eIF1, eIF2, eIF3, and eIF4G PNAS, November 8, 2005; 102(45): 16164 - 16169. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. R. Singh, C. Curtis, Y. Yamamoto, N. S. Hall, D. S. Kruse, H. He, E. M. Hannig, and K. Asano Eukaryotic Translation Initiation Factor 5 Is Critical for Integrity of the Scanning Preinitiation Complex and Accurate Control of GCN4 Translation Mol. Cell. Biol., July 1, 2005; 25(13): 5480 - 5491. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Pedulla, R. Palermo, D. Hasenohrl, U. Blasi, P. Cammarano, and P. Londei The archaeal eIF2 homologue: functional properties of an ancient translation initiation factor Nucleic Acids Res., March 23, 2005; 33(6): 1804 - 1812. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Unbehaun, S. I. Borukhov, C. U.T. Hellen, and T. V. Pestova Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP Genes & Dev., December 15, 2004; 18(24): 3078 - 3093. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. R. Singh, Y. Yamamoto, and K. Asano Physical Association of Eukaryotic Initiation Factor (eIF) 5 Carboxyl-terminal Domain with the Lysine-rich eIF2{beta} Segment Strongly Enhances Its Binding to eIF3 J. Biol. Chem., November 26, 2004; 279(48): 49644 - 49655. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Valasek, K. H. Nielsen, F. Zhang, C. A. Fekete, and A. G. Hinnebusch Interactions of Eukaryotic Translation Initiation Factor 3 (eIF3) Subunit NIP1/c with eIF1 and eIF5 Promote Preinitiation Complex Assembly and Regulate Start Codon Selection Mol. Cell. Biol., November 1, 2004; 24(21): 9437 - 9455. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Yatime, E. Schmitt, S. Blanquet, and Y. Mechulam Functional Molecular Mapping of Archaeal Translation Initiation Factor 2 J. Biol. Chem., April 16, 2004; 279(16): 15984 - 15993. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Gutierrez, M. J. Osborne, N. Siddiqui, J.-F. Trempe, C. Arrowsmith, and K. Gehring Structure of the archaeal translation initiation factor aIF2{beta} from Methanobacterium thermoautotrophicum: Implications for translation initiation Protein Sci., March 1, 2004; 13(3): 659 - 667. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. He, T. von der Haar, C. R. Singh, M. Ii, B. Li, A. G. Hinnebusch, J. E. G. McCarthy, and K. Asano The Yeast Eukaryotic Initiation Factor 4G (eIF4G) HEAT Domain Interacts with eIF1 and eIF5 and Is Involved in Stringent AUG Selection Mol. Cell. Biol., August 1, 2003; 23(15): 5431 - 5445. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Valasek, A. A. Mathew, B.-S. Shin, K. H. Nielsen, B. Szamecz, and A. G. Hinnebusch The yeast eIF3 subunits TIF32/a, NIP1/c, and eIF5 make critical connections with the 40S ribosome in vivo Genes & Dev., March 15, 2003; 17(6): 786 - 799. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Majumdar, A. Bandyopadhyay, and U. Maitra Mammalian Translation Initiation Factor eIF1 Functions with eIF1A and eIF3 in the Formation of a Stable 40 S Preinitiation Complex J. Biol. Chem., February 14, 2003; 278(8): 6580 - 6587. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. de Breyne, V. Simonet, T. Pelet, and J. Curran Identification of a cis-acting element required for shunt-mediated translational initiation of the Sendai virus Y proteins Nucleic Acids Res., January 15, 2003; 31(2): 608 - 618. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. H. Lee, T. V. Pestova, B.-S. Shin, C. Cao, S. K. Choi, and T. E. Dever Initiation factor eIF5B catalyzes second GTP-dependent step in eukaryotic translation initiation PNAS, December 24, 2002; 99(26): 16689 - 16694. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. L. Zoll, L. E. Horton, A. A. Komar, J. O. Hensold, and W. C. Merrick Characterization of Mammalian eIF2A and Identification of the Yeast Homolog J. Biol. Chem., September 27, 2002; 277(40): 37079 - 37087. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Majumdar, A. Bandyopadhyay, H. Deng, and U. Maitra Phosphorylation of mammalian translation initiation factor 5 (eIF5) in vitro and in vivo Nucleic Acids Res., March 1, 2002; 30(5): 1154 - 1162. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. V. Pestova, V. G. Kolupaeva, I. B. Lomakin, E. V. Pilipenko, I. N. Shatsky, V. I. Agol, and C. U. T. Hellen Molecular mechanisms of translation initiation in eukaryotes PNAS, June 19, 2001; 98(13): 7029 - 7036. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Asano, J. Clayton, A. Shalev, and A. G. Hinnebusch A multifactor complex of eukaryotic initiation factors, eIF1, eIF2, eIF3, eIF5, and initiator tRNAMet is an important translation initiation intermediate in vivo Genes & Dev., October 1, 2000; 14(19): 2534 - 2546. [Abstract] [Full Text] |
||||
![]() |
S. Das and U. Maitra Mutational Analysis of Mammalian Translation Initiation Factor 5 (eIF5): Role of Interaction between the beta Subunit of eIF2 and eIF5 in eIF5 Function In Vitro and In Vivo Mol. Cell. Biol., June 1, 2000; 20(11): 3942 - 3950. [Abstract] [Full Text] |
||||
![]() |
J. L. Riechmann, T. Ito, and E. M. Meyerowitz Non-AUG Initiation of AGAMOUS mRNA Translation in Arabidopsis thaliana Mol. Cell. Biol., December 1, 1999; 19(12): 8505 - 8512. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. P. Laurino, G. M. Thompson, E. Pacheco, and B. A. Castilho The beta Subunit of Eukaryotic Translation Initiation Factor 2 Binds mRNA through the Lysine Repeats and a Region Comprising the C2-C2 Motif Mol. Cell. Biol., January 1, 1999; 19(1): 173 - 181. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. E. G. McCarthy Posttranscriptional Control of Gene Expression in Yeast Microbiol. Mol. Biol. Rev., December 1, 1998; 62(4): 1492 - 1553. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. R. Greenberg, L. Phan, Z. Gu, A. deSilva, C. Apolito, F. Sherman, A. G. Hinnebusch, and D. S. Goldfarb Nip1p Associates with 40 S Ribosomes and the Prt1p Subunit of Eukaryotic Initiation Factor 3 and Is Required for Efficient Translation Initiation J. Biol. Chem., September 4, 1998; 273(36): 23485 - 23494. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. J. Drabkin and U. L. RajBhandary Initiation of Protein Synthesis in Mammalian Cells with Codons Other Than AUG and Amino Acids Other Than Methionine Mol. Cell. Biol., September 1, 1998; 18(9): 5140 - 5147. [Abstract] [Full Text] |
||||
![]() |
L. Phan, X. Zhang, K. Asano, J. Anderson, H.-P. Vornlocher, J. R. Greenberg, J. Qin, and A. G. Hinnebusch Identification of a Translation Initiation Factor 3 (eIF3) Core Complex, Conserved in Yeast and Mammals, That Interacts with eIF5 Mol. Cell. Biol., August 1, 1998; 18(8): 4935 - 4946. [Abstract] [Full Text] |
||||
![]() |
S. K. Choi, J. H. Lee, W. L. Zoll, W. C. Merrick, and T. E. Dever Promotion of Met-tRNAiMet Binding to Ribosomes by yIF2, a Bacterial IF2 Homolog in Yeast Science, June 12, 1998; 280(5370): 1757 - 1760. [Abstract] [Full Text] |
||||
![]() |
H.-J. Lo, H.-K. Huang, and T. F. Donahue RNA Polymerase I-Promoted HIS4 Expression Yields Uncapped, Polyadenylated mRNA That Is Unstable and Inefficiently Translated in Saccharomyces cerevisiae Mol. Cell. Biol., February 1, 1998; 18(2): 665 - 675. [Abstract] [Full Text] |
||||
![]() |
M. M. Pooggin, T. Hohn, and J. Futterer Role of a Short Open Reading Frame in Ribosome Shunt on the Cauliflower Mosaic Virus RNA Leader J. Biol. Chem., June 2, 2000; 275(23): 17288 - 17296. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Das, R. Ghosh, and U. Maitra Eukaryotic Translation Initiation Factor 5 Functions as a GTPase-activating Protein J. Biol. Chem., February 23, 2001; 276(9): 6720 - 6726. [Abstract] [Full Text] [PDF] |
||||
![]() |
U. L. RajBhandary More surprises in translation: Initiation without the initiator tRNA PNAS, February 15, 2000; 97(4): 1325 - 1327. [Full Text] [PDF] |
||||