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Vol. 12, No. 19, pp. 3123-3136, October 1, 1998

RESEARCH PAPER
The flagellar anti-sigma factor FlgM actively dissociates Salmonella typhimurium sigma 28 RNA polymerase holoenzyme

Meggen S. Chadsey, Joyce E. Karlinsey, and Kelly T. Hughes1

Department of Microbiology, University of Washington, Seattle, Washington 98195 USA

The anti-sigma factor FlgM of Salmonella typhimurium inhibits transcription of class 3 flagellar genes through a direct interaction with the flagellar-specific sigma  factor, sigma 28. FlgM is believed to prevent RNA polymerase (RNAP) holoenzyme formation by sequestering free sigma 28. We have analyzed FlgM-mediated inhibition of sigma 28 activity in vitro. FlgM is able to inhibit sigma 28 activity even when sigma 28 is first allowed to associate with core RNAP. Surface plasmon resonance (SPR) was used to evaluate the interaction between FlgM and both sigma 28 and sigma 28 holoenzyme (Esigma 28). The Kd of the sigma 28-FlgM complex is ~2 × 10-10 M; missense mutations in FlgM that cause a defect in sigma 28 inhibition in vivo increase the Kd of this interaction by 4- to 10-fold. SPR measurements of Esigma 28 dissociation in the presence of FlgM indicate that FlgM destabilizes Esigma 28, presumably via an interaction with the sigma  subunit. Our data provide the first direct evidence of an interaction between FlgM and Esigma 28. We propose that this secondary activity of FlgM, which we term holoenzyme destabilization, enhances the sensitivity of the cell to changes in FlgM levels during flagellar biogenesis.

[Key Words: sigma -factors; RNA polymerase; transcription; Salmonella typhimurium]


GENES & DEVELOPMENT 12:3123-3136 © 1998 by Cold Spring Harbor Laboratory Press  ISSN 0890-9369/98 $5.00

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