|
|
|
Vol. 15, No. 14, pp. 1753-1758, July 15, 2001
Department of Biochemistry and Molecular Biology, Bloomberg School
of Public Health, Johns Hopkins University, Baltimore, Maryland 21205, USA
Plants maintain cytosine methylation at CG and non-CG residues to
control gene expression and genome stability. In a screen for
Arabidopsis mutants that alter methylation and silencing of a
densely methylated endogenous reporter gene, we recovered 11 loss-of-function alleles in the CMT3 chromomethylase gene. The cmt3 mutants displayed enhanced expression and reduced
methylation of the reporter, particularly at non-CG cytosines. CNG
methylation was also reduced at repetitive centromeric sequences. Thus,
CMT3 is a key determinant for non-CG methylation. The lack of
CMT homologs in animal genomes could account for the observation that
in contrast to plants, animals maintain primarily CG methylation.
[Key Words: Cytosine methyltransferase; gene silencing; Arabidopsis thaliana]
This article has been cited by other articles:
![]() |
I. R. Henderson and S. E. Jacobsen Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading Genes & Dev., June 15, 2008; 22(12): 1597 - 1606. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. Zhang The Epigenetic Landscape of Plants Science, April 25, 2008; 320(5875): 489 - 492. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Chen, M. Ha, E. Lackey, J. Wang, and Z. J. Chen RNAi of met1 Reduces DNA Methylation and Induces Genome-Specific Changes in Gene Expression and Centromeric Small RNA Accumulation in Arabidopsis Allopolyploids Genetics, April 1, 2008; 178(4): 1845 - 1858. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Saze, A. Shiraishi, A. Miura, and T. Kakutani Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana Science, January 25, 2008; 319(5862): 462 - 465. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Agorio and P. Vera ARGONAUTE4 Is Required for Resistance to Pseudomonas syringae in Arabidopsis PLANT CELL, November 1, 2007; 19(11): 3778 - 3790. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. Makarevitch, R. M. Stupar, A. L. Iniguez, W. J. Haun, W. B. Barbazuk, S. M. Kaeppler, and N. M. Springer Natural Variation for Alleles Under Epigenetic Control by the Maize Chromomethylase Zmet2 Genetics, October 1, 2007; 177(2): 749 - 760. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. H. Rangwala and E. J. Richards Differential Epigenetic Regulation Within an Arabidopsis Retroposon Family Genetics, May 1, 2007; 176(1): 151 - 160. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Mull, M. L. Ebbs, and J. Bender A Histone Methylation-Dependent DNA Methylation Pathway Is Uniquely Impaired by Deficiency in Arabidopsis S-Adenosylhomocysteine Hydrolase Genetics, November 1, 2006; 174(3): 1161 - 1171. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Xiao, R. C. Brown, B. E. Lemmon, J. J. Harada, R. B. Goldberg, and R. L. Fischer Regulation of Seed Size by Hypomethylation of Maternal and Paternal Genomes Plant Physiology, November 1, 2006; 142(3): 1160 - 1168. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. L. Keyte, R. Percifield, B. Liu, and J. F. Wendel Infraspecific DNA Methylation Polymorphism in Cotton (Gossypium hirsutum L.) J. Hered., September 1, 2006; 97(5): 444 - 450. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. R. Hoen, K. C. Park, N. Elrouby, Z. Yu, N. Mohabir, R. K. Cowan, and T. E. Bureau Transposon-Mediated Expansion and Diversification of a Family of ULP-like Genes Mol. Biol. Evol., June 1, 2006; 23(6): 1254 - 1268. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. L. Ebbs and J. Bender Locus-Specific Control of DNA Methylation by the Arabidopsis SUVH5 Histone Methyltransferase PLANT CELL, May 1, 2006; 18(5): 1166 - 1176. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Xiao, K. D. Custard, R. C. Brown, B. E. Lemmon, J. J. Harada, R. B. Goldberg, and R. L. Fischer DNA Methylation Is Critical for Arabidopsis Embryogenesis and Seed Viability PLANT CELL, April 1, 2006; 18(4): 805 - 814. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Xia, J. Wang, C. Liu, Y. Wang, Y. Wang, J. Zhai, J. Liu, X. Hong, X. Cao, J.-K. Zhu, et al. ROR1/RPA2A, a Putative Replication Protein A2, Functions in Epigenetic Gene Silencing and in Regulation of Meristem Development in Arabidopsis PLANT CELL, January 1, 2006; 18(1): 85 - 103. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. R. Woodhouse, M. Freeling, and D. Lisch The mop1 (mediator of paramutation1) Mutant Progressively Reactivates One of the Two Genes Encoded by the MuDR Transposon in Maize Genetics, January 1, 2006; 172(1): 579 - 592. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. N. Lukens, J. C. Pires, E. Leon, R. Vogelzang, L. Oslach, and T. Osborn Patterns of Sequence Loss and Cytosine Methylation within a Population of Newly Resynthesized Brassica napus Allopolyploids Plant Physiology, January 1, 2006; 140(1): 336 - 348. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. L. Ebbs, L. Bartee, and J. Bender H3 Lysine 9 Methylation Is Maintained on a Transcribed Inverted Repeat by Combined Action of SUVH6 and SUVH4 Methyltransferases Mol. Cell. Biol., December 1, 2005; 25(23): 10507 - 10515. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Zemach, Y. Li, B. Wayburn, H. Ben-Meir, V. Kiss, Y. Avivi, V. Kalchenko, S. E. Jacobsen, and G. Grafi DDM1 Binds Arabidopsis Methyl-CpG Binding Domain Proteins and Affects Their Subnuclear Localization PLANT CELL, May 1, 2005; 17(5): 1549 - 1558. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. S.C.F. Rocha, M. Sheikh, R. Melchiorre, M. Fagard, S. Boutet, R. Loach, B. Moffatt, C. Wagner, H. Vaucheret, and I. Furner The Arabidopsis HOMOLOGY-DEPENDENT GENE SILENCING1 Gene Codes for an S-Adenosyl-L-Homocysteine Hydrolase Required for DNA Methylation-Dependent Gene Silencing PLANT CELL, February 1, 2005; 17(2): 404 - 417. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Chang and C. S. Pikaard Transcript Profiling in Arabidopsis Reveals Complex Responses to Global Inhibition of DNA Methylation and Histone Deacetylation J. Biol. Chem., January 7, 2005; 280(1): 796 - 804. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Liu, Y. He, R. Amasino, and X. Chen siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis Genes & Dev., December 1, 2004; 18(23): 2873 - 2878. [Abstract] [Full Text] [PDF] |
||||
![]() |
O. Mathieu and J. Bender RNA-directed DNA methylation J. Cell Sci., October 1, 2004; 117(21): 4881 - 4888. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. MADLUNG and L. COMAI The Effect of Stress on Genome Regulation and Structure Ann. Bot., October 1, 2004; 94(4): 481 - 495. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Svoboda, P. Stein, W. Filipowicz, and R. M. Schultz Lack of homologous sequence-specific DNA methylation in response to stable dsRNA expression in mouse oocytes Nucleic Acids Res., July 9, 2004; 32(12): 3601 - 3606. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Gehring, Y. Choi, and R. L. Fischer Imprinting and Seed Development PLANT CELL, June 1, 2004; 16(suppl_1): S203 - S213. [Full Text] [PDF] |
||||
![]() |
H. Liu, J.-M. Kim, and F. Aoki Regulation of histone H3 lysine 9 methylation in oocytes and early pre-implantation embryos Development, May 15, 2004; 131(10): 2269 - 2280. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Kinoshita, A. Miura, Y. Choi, Y. Kinoshita, X. Cao, S. E. Jacobsen, R. L. Fischer, and T. Kakutani One-Way Control of FWA Imprinting in Arabidopsis Endosperm by DNA Methylation Science, January 23, 2004; 303(5657): 521 - 523. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Melquist and J. Bender An Internal Rearrangement in an Arabidopsis Inverted Repeat Locus Impairs DNA Methylation Triggered by the Locus Genetics, January 1, 2004; 166(1): 437 - 448. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Ito, A. Koike, N. Koizumi, and H. Sano Methylated DNA-Binding Proteins from Arabidopsis Plant Physiology, December 1, 2003; 133(4): 1747 - 1754. [Abstract] [Full Text] |
||||
![]() |
S. Luo and D. Preuss Strand-biased DNA methylation associated with centromeric regions in Arabidopsis PNAS, September 16, 2003; 100(19): 11133 - 11138. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Melquist and J. Bender Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis Genes & Dev., August 15, 2003; 17(16): 2036 - 2047. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Pineiro, C. Gomez-Mena, R. Schaffer, J. M. Martinez-Zapater, and G. Coupland EARLY BOLTING IN SHORT DAYS Is Related to Chromatin Remodeling Factors and Regulates Flowering in Arabidopsis by Repressing FT PLANT CELL, July 1, 2003; 15(7): 1552 - 1562. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. W. Kankel, D. E. Ramsey, T. L. Stokes, S. K. Flowers, J. R. Haag, J. A. Jeddeloh, N. C. Riddle, M. L. Verbsky, and E. J. Richards Arabidopsis MET1 Cytosine Methyltransferase Mutants Genetics, March 1, 2003; 163(3): 1109 - 1122. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. A. Quiel and J. Bender Glucose Conjugation of Anthranilate by the Arabidopsis UGT74F2 Glucosyltransferase Is Required for Tryptophan Mutant Blue Fluorescence J. Biol. Chem., February 14, 2003; 278(8): 6275 - 6281. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Kakutani Epi-Alleles in Plants: Inheritance of Epigenetic Information over Generations Plant Cell Physiol., October 15, 2002; 43(10): 1106 - 1111. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Kloti, X. He, I. Potrykus, T. Hohn, and J. Futterer Tissue-specific silencing of a transgene in rice PNAS, August 6, 2002; 99(16): 10881 - 10886. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. A. Martienssen and V. Colot DNA Methylation and Epigenetic Inheritance in Plants and Filamentous Fungi Science, August 10, 2001; 293(5532): 1070 - 1074. [Abstract] [Full Text] [PDF] |
||||