|
|
|
RESEARCH PAPER
Erasmus University Medical Center, Faculty of Medicine and Health Sciences, MGC Department of Cell Biology and Genetics, Rotterdam, 3000 DR, The Netherlands
The human
-globin locus control region (LCR) is required for the maintenance of an open chromatin configuration of the locus. It interacts with the genes and the hypersensitive regions flanking the locus to form an active chromatin hub (ACH) transcribing the genes. Proper developmental control of globin genes is largely determined by gene proximal regulatory sequences. Here, we provide the first functional evidence of the role of the most active sites of the LCR and the promoter of the
-globin gene in the maintenance of the ACH. When the human
-globin gene promoter is deleted in the context of a full LCR, the ACH is maintained with the
-globin gene remaining in proximity. Additional deletion of hypersensitive site HS3 or HS2 of the LCR shows that HS3, but not HS2, in combination with the
-globin promoter is crucial for the maintenance of the ACH at the definitive stage. We conclude that multiple interactions between the LCR and the
-globin gene are required to maintain the appropriate spatial configuration in vivo.
[Keywords: Human
-globin locus; LCR; ACH; promoter; transcription; chromatin structure]
Received October 28, 2003; revised version accepted April 20, 2004.
1 Present address: Utrecht University, Rudolf Magnus Institute for Neurosciences, Department of Pharmacology, 3584CG, Utrecht, The Netherlands.
2 Corresponding author. E-MAIL f.grosveld{at}erasmusmc.nl; FAX 31-10-408-9468.
![]()
CiteULike
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:
![]() |
L. Valenzuela, N. Dhillon, R. N. Dubey, M. R. Gartenberg, and R. T. Kamakaka Long-Range Communication between the Silencers of HMR Mol. Cell. Biol., March 15, 2008; 28(6): 1924 - 1935. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. V. Tsytsykova, R. Rajsbaum, J. V. Falvo, F. Ligeiro, S. R. Neely, and A. E. Goldfeld Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers PNAS, October 23, 2007; 104(43): 16850 - 16855. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Shimotsuma, H. Matsuzaki, O. Tanabe, A. D. Campbell, J. D. Engel, A. Fukamizu, and K. Tanimoto Linear Distance from the Locus Control Region Determines {varepsilon}-Globin Transcriptional Activity Mol. Cell. Biol., August 15, 2007; 27(16): 5664 - 5672. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Ferrai, D. Munari, P. Luraghi, L. Pecciarini, M. G. Cangi, C. Doglioni, F. Blasi, and M. P. Crippa A Transcription-dependent Micrococcal Nuclease-resistant Fragment of the Urokinase-type Plasminogen Activator Promoter Interacts with the Enhancer J. Biol. Chem., April 27, 2007; 282(17): 12537 - 12546. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Kim, H. Zhao, I. Ifrim, and A. Dean {beta}-Globin Intergenic Transcription and Histone Acetylation Dependent on an Enhancer Mol. Cell. Biol., April 15, 2007; 27(8): 2980 - 2986. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Hizume, S. Araki, K. Yoshikawa, and K. Takeyasu Topoisomerase II, scaffold component, promotes chromatin compaction in vitro in a linker-histone H1-dependent manner Nucleic Acids Res., April 11, 2007; (2007) gkm116v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Meier, S. Krpic, P. Rodriguez, J. Strouboulis, M. Monti, J. Krijgsveld, M. Gering, R. Patient, A. Hostert, and F. Grosveld Novel binding partners of Ldb1 are required for haematopoietic development Development, December 15, 2006; 133(24): 4913 - 4923. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Kajiyama, J. Tian, and J. Locker Characterization of Distant Enhancers and Promoters in the Albumin-{alpha}-Fetoprotein Locus during Active and Silenced Expression J. Biol. Chem., October 6, 2006; 281(40): 30122 - 30131. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Dostie, T. A. Richmond, R. A. Arnaout, R. R. Selzer, W. L. Lee, T. A. Honan, E. D. Rubio, A. Krumm, J. Lamb, C. Nusbaum, et al. Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements Genome Res., October 1, 2006; 16(10): 1299 - 1309. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. A. Bender, R. Byron, T. Ragoczy, A. Telling, M. Bulger, and M. Groudine Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription Blood, August 15, 2006; 108(4): 1395 - 1401. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Shimada, H. Matsudo, K. Osano, H. Arakawa, J.-M. Buerstedde, Y. Matsumoto, K. Chayahara, A. Torihata, and M. Ono Activation of the chicken Ig-{beta} locus by the collaboration of scattered regulatory regions through changes in chromatin structure Nucleic Acids Res., August 11, 2006; 34(13): 3794 - 3802. [Abstract] [Full Text] [PDF] |
||||
![]() |
G.-L. Zhou, L. Xin, W. Song, L.-J. Di, G. Liu, X.-S. Wu, D.-P. Liu, and C.-C. Liang Active Chromatin Hub of the Mouse {alpha}-Globin Locus Forms in a Transcription Factory of Clustered Housekeeping Genes. Mol. Cell. Biol., July 1, 2006; 26(13): 5096 - 5105. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. E. Pipkin and M. G. Lichtenheld A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes Nucleic Acids Res., March 1, 2006; 34(4): e34 - e34. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Savitskaya, L. Melnikova, M. Kostuchenko, E. Kravchenko, E. Pomerantseva, T. Boikova, D. Chetverina, A. Parshikov, P. Zobacheva, E. Gracheva, et al. Study of Long-Distance Functional Interactions between Su(Hw) Insulators That Can Regulate Enhancer-Promoter Communication in Drosophila melanogaster Mol. Cell. Biol., February 1, 2006; 26(3): 754 - 761. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Tang, Z. Wang, Y. Huang, D.-p. Liu, G. Liu, W. Shen, X. Tang, D. Feng, and C.-c. Liang Gene order in human {alpha}-globin locus is required for their temporal specific expressions Genes Cells, February 1, 2006; 11(2): 123 - 131. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Bank Regulation of human fetal hemoglobin: new players, new complexities Blood, January 15, 2006; 107(2): 435 - 443. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. A. Magee, L.-w. Chang, G. D. Stormo, and J. Milbrandt Direct, Androgen Receptor-Mediated Regulation of the FKBP5 Gene via a Distal Enhancer Element Endocrinology, January 1, 2006; 147(1): 590 - 598. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. A. Jones and R. A. Flavell Distal Enhancer Elements Transcribe Intergenic RNA in the IL-10 Family Gene Cluster J. Immunol., December 1, 2005; 175(11): 7437 - 7446. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. GROSVELD, P. RODRIGUEZ, N. MEIER, S. KRPIC, F. POURFARZAD, P. PAPADOPOULOS, K. KOLODZIEJ, G. P. PATRINOS, A. HOSTERT, and J. STROUBOULIS Isolation and Characterization of Hematopoietic Transcription Factor Complexes by in Vivo Biotinylation Tagging and Mass Spectrometry Ann. N.Y. Acad. Sci., November 1, 2005; 1054(1): 55 - 67. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Harju, P. A. Navas, G. Stamatoyannopoulos, and K. R. Peterson Genome Architecture of the Human {beta}-Globin Locus Affects Developmental Regulation of Gene Expression Mol. Cell. Biol., October 15, 2005; 25(20): 8765 - 8778. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Xiang, H. Han, G. Barkess, I. Olave, X. Fang, W. Yin, G. Stamatoyannopoulos, and Q. Li Juxtaposition of the HPFH2 enhancer is not sufficient to reactivate the {gamma}-globin gene in adult erythropoiesis Hum. Mol. Genet., October 15, 2005; 14(20): 3047 - 3056. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. Fang, J. Sun, P. Xiang, M. Yu, P. A. Navas, K. R. Peterson, G. Stamatoyannopoulos, and Q. Li Synergistic and Additive Properties of the Beta-Globin Locus Control Region (LCR) Revealed by 5'HS3 Deletion Mutations: Implication for LCR Chromatin Architecture Mol. Cell. Biol., August 15, 2005; 25(16): 7033 - 7041. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Buzina, M. I. Aladjem, J. L. Kolman, G. M. Wahl, and J. Ellis Initiation of DNA replication at the human {beta}-globin 3' enhancer Nucleic Acids Res., August 5, 2005; 33(14): 4412 - 4424. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Tominaga, B. Kirtane, J. G. Jackson, Y. Ikeno, T. Ikeda, C. Hawks, J. R. Smith, M. M. Matzuk, and O. M. Pereira-Smith MRG15 Regulates Embryonic Development and Cell Proliferation Mol. Cell. Biol., April 15, 2005; 25(8): 2924 - 2937. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. Liu and W. T. Garrard Long-Range Interactions between Three Transcriptional Enhancers, Active V{kappa} Gene Promoters, and a 3' Boundary Sequence Spanning 46 Kilobases Mol. Cell. Biol., April 15, 2005; 25(8): 3220 - 3231. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. G. West and P. Fraser Remote control of gene transcription Hum. Mol. Genet., April 15, 2005; 14(suppl_1): R101 - R111. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. P. Martins, G. C. Ostermeier, and S. A. Krawetz Nuclear Matrix Interactions at the Human Protamine Domain: A WORKING MODEL OF POTENTIATION J. Biol. Chem., December 10, 2004; 279(50): 51862 - 51868. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Drissen, R.-J. Palstra, N. Gillemans, E. Splinter, F. Grosveld, S. Philipsen, and W. de Laat The active spatial organization of the {beta}-globin locus requires the transcription factor EKLF Genes & Dev., October 15, 2004; 18(20): 2485 - 2490. [Abstract] [Full Text] [PDF] |
||||