|
|
|
REVIEW
Department of Systems Biology, Harvard Medical School and the Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA
Gene expression occurs through a complex mRNA-protein (mRNP) system that stretches from transcription to translation. Gene expression processes are increasingly studied from global perspectives in order to understand their pathways, properties, and behaviors as a system. Here we review these beginnings of mRNP systems biology, as they have emerged from recent large-scale investigation of mRNP components, interactions, and dynamics. Such work has begun to lay the foundation for a broader, integrated view of mRNP organization in gene expression.
[Keywords: Systems biology; messenger ribonucleoprotein complexes; mRNP; genomics; mRNA decay; mRNA transport; translation; splicing]
1 Corresponding author.
E-MAIL Pamela_silver{at}dfci.harvard.edu; FAX (617) 632-5103.
![]()
CiteULike
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:
![]() |
C. Ufer, C. C. Wang, M. Fahling, H. Schiebel, B. J. Thiele, E. E. Billett, H. Kuhn, and A. Borchert Translational regulation of glutathione peroxidase 4 expression through guanine-rich sequence-binding factor 1 is essential for embryonic brain development Genes & Dev., July 1, 2008; 22(13): 1838 - 1850. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. R. Morris, N. Mukherjee, and J. D. Keene Ribonomic Analysis of Human Pum1 Reveals cis-trans Conservation across Species despite Evolution of Diverse mRNA Target Sets Mol. Cell. Biol., June 15, 2008; 28(12): 4093 - 4103. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. Wang and C. B. Burge Splicing regulation: From a parts list of regulatory elements to an integrated splicing code RNA, May 1, 2008; 14(5): 802 - 813. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. J. Terry and S. R. Wente Nuclear mRNA export requires specific FG nucleoporins for translocation through the nuclear pore complex J. Cell Biol., September 24, 2007; 178(7): 1121 - 1132. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Jonson, J. Vikesaa, A. Krogh, L. K. Nielsen, T. vO. Hansen, R. Borup, A. H. Johnsen, J. Christiansen, and F. C. Nielsen Molecular Composition of IMP1 Ribonucleoprotein Granules Mol. Cell. Proteomics, May 1, 2007; 6(5): 798 - 811. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. J.M. Walhout Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping Genome Res., December 1, 2006; 16(12): 1445 - 1454. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Culjkovic, I. Topisirovic, L. Skrabanek, M. Ruiz-Gutierrez, and K. L.B. Borden eIF4E is a central node of an RNA regulon that governs cellular proliferation J. Cell Biol., November 6, 2006; 175(3): 415 - 426. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Pullmann Jr., K. Abdelmohsen, A. Lal, J. L. Martindale, R. D. Ladner, and M. Gorospe Differential Stability of Thymidylate Synthase 3'-Untranslated Region Polymorphic Variants Regulated by AUF1 J. Biol. Chem., August 18, 2006; 281(33): 23456 - 23463. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. A. Swinburne, C. A. Meyer, X. S. Liu, P. A. Silver, and A. S. Brodsky Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription Genome Res., July 1, 2006; 16(7): 912 - 921. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. T. Prechtel, J. Chemnitz, S. Schirmer, C. Ehlers, I. Langbein-Detsch, J. Stulke, M.-C. Dabauvalle, R. H. Kehlenbach, and J. Hauber Expression of CD83 Is Regulated by HuR via a Novel cis-Active Coding Region RNA Element J. Biol. Chem., April 21, 2006; 281(16): 10912 - 10925. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. P. Gerber, S. Luschnig, M. A. Krasnow, P. O. Brown, and D. Herschlag Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster PNAS, March 21, 2006; 103(12): 4487 - 4492. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. C. Foat, S. S. Houshmandi, W. M. Olivas, and H. J. Bussemaker Profiling condition-specific, genome-wide regulation of mRNA stability in yeast PNAS, December 6, 2005; 102(49): 17675 - 17680. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. J. Moore From Birth to Death: The Complex Lives of Eukaryotic mRNAs Science, September 2, 2005; 309(5740): 1514 - 1518. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Duttagupta, B. Tian, C. J. Wilusz, D. T. Khounh, P. Soteropoulos, M. Ouyang, J. P. Dougherty, and S. W. Peltz Global Analysis of Pub1p Targets Reveals a Coordinate Control of Gene Expression through Modulation of Binding and Stability Mol. Cell. Biol., July 1, 2005; 25(13): 5499 - 5513. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. N. Vemuri and A. A. Aristidou Metabolic Engineering in the -omics Era: Elucidating and Modulating Regulatory Networks Microbiol. Mol. Biol. Rev., June 1, 2005; 69(2): 197 - 216. [Abstract] [Full Text] [PDF] |
||||