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Vol. 12, No. 13, pp. 1947-1952, July 1, 1998
1 Huntsman Cancer Institute, Center for Children, Department of Oncological Sciences, University of Utah, Salt Lake City, Utah 84112 USA; 2 Institut de Genetique et de Biologie Moleculaire et Cellulaire, Centre National de la Recherche Scientifique/Institut National de la Santé et de la Recherche Médicale/Université Louis Pasteur (CNRS/INSERM/ULP), 67404 Illkirch Cedex, France; 3 Howard Hughes Medical Institute, Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706 USA
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Abstract |
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To build complex organs, embryos have evolved mechanisms that integrate the development of cells unrelated to one another by cell type or ancestry. Here we show that the pha-4 locus establishes organ identity for the Caenorhabditis elegans pharynx. In pha-4 mutants, pharyngeal cells are transformed into ectoderm. Conversely, ectopic pha-4 expression produces excess pharyngeal cells. pha-4 encodes an HNF-3 homolog selectively expressed in the nascent digestive tract, including all pharynx precursors at the time they are restricted to a pharyngeal fate. We suggest that pha-4 is a key component of a transcription-based mechanism to endow cells with pharyngeal organ identity.
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Introduction |
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The digestive tract consists of an epithelial tube that is spatially and functionally regionalized. In simple animals, such as Hydra, the gut contains only a few specialized cells and is divided into only two regions: the mouth and gut sac. In more complex animals, the digestive tract is composed of many different cell types and compartments. How is this complicated organ built? To tackle this question, we are studying foregut, or pharynx, development in the experimentally tractable organism Caenorhabditis elegans.
The nematode pharynx is a large neuromuscular organ used for feeding.
Like the foregut compartments of more complex animals, the pharynx is
composed of many different cell types such as muscles, glands, neurons,
epithelia, and valves (Albertson and Thomson 1976
). Two early
blastomeres, ABa and MS, generate the pharynx (Sulston et al. 1983
).
Each blastomere gives rise to multiple cell types within the pharynx,
and each uses a different genetic program to produce pharyngeal cells
(for review, see Schnabel and Priess 1997
). The ABa-derived pathway
depends on intercellular signaling mediated by the GLP-1 receptor,
whereas pharynx production from MS appears to be cell autonomous. Two
predicted transcription factors, skn-1 and pop-1, are
necessary for the MS developmental program, including the production of
pharyngeal cells. Recent studies have begun to elucidate the gene
networks controlling glp-1, skn-1, and pop-1 (for
review, see Han 1997
); however, the mechanisms that act downstream of
these genes, to mediate pharyngeal organogenesis, are largely unknown.
The genetic pathways that generate the ABa and MS cell lineages
converge on the pha-4 locus. Animals lacking zygotic
pha-4 activity fail to produce pharynx cells from either ABa
or MS (Mango et al. 1994a
). In addition, these mutants lack a rectum.
The rectum is descended from a third blastomere called ABp and does not
derive from the pharyngeal cell lineages. Most other cells appear to be
generated normally in pha-4 mutant embryos, including cells from ABa and MS that are not part of the pharynx. Thus, the
pha-4 locus is critical to generate a group of cells related
by function (the digestive tract) rather than by cell lineage (ABa, MS)
or cell type (pharynx neuron, pharynx muscle, etc.). This phenotype reflects a transition during embryogenesis from maternal genes, like
glp-1, skn-1, and pop-1, that control entire cell
lineages and broad domains of axial patterning, to zygotic genes, like pha-4, that regulate the formation of specific organs,
tissues, and cell types.
In the present study we address two potential mechanisms by which
pha-4 could function. First, pha-4 could establish an
organizing center that is critical for development of the entire
pharynx. By analogy, loss of the anchor cell during C. elegans
vulval development results in no vulva being formed (Greenwald 1997
).
Similarly, mutations in WT-1 or c-ret lead to the
absence of the kidney in mouse embryos (Kreidberg et al.
1993
; Schuchardt et al. 1994
). Each of these phenotypes reflects a
loss in cell signaling. For vulval development, signaling occurs
between cells in two different organs, whereas in kidney formation
WT-1 and c-ret are necessary for epitheliomesenchymal
interactions among different tissues within the developing kidney primordium.
A second possible explanation for pha-4 function is that the
protein could act within individual pharyngeal cells to establish pharynx identity. That is, pha-4 might be analogous to
pax-6 and the network of transcription factors that initiate
eye formation (Desplan 1997
). Loss-of-function mutations in either
eyeless, sine oculis, eyes absent, or dachshund leads
to a complete absence of the eye in Drosophila. Conversely,
each of these genes, either alone or in combination, is capable of
inducing ectopic eyes. These phenotypes suggest that this group of
factors synergize to define eye identity during development.
In this report we present evidence that pha-4 encodes an
HNF-3 homolog that is expressed in all pharyngeal precursors
and establishes their fate. We suggest that pha-4 and the
Drosophila eye genes represent a new class of developmental
regulator that specifies organ identity. Given that HNF-3
genes have been implicated in gut development in other organisms
(Kaufmann and Knochel 1996
), we propose that specification of organ
identity within the digestive tract may be a conserved feature of
HNF-3 proteins.
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Results and Discussion |
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pha-4 encodes the HNF-3 homolog Ce-fkh-1 and is expressed in the developing digestive tract
To understand the molecular mechanism of pha-4 function,
we identified the gene by a combination of positional cloning and candidate gene approaches. Previous analyses showed that pha-4 is located within the YAC Y79B4 (S. Mango, unpubl.). YAC Y79B4 contains
the predicted winged helix transcription factor Ce-fkh-1, which was an excellent candidate to encode pha-4 based on map position and mRNA expression (Azzaria et al. 1996
; S. Mango, unpubl.). Three lines of evidence demonstrate that pha-4 corresponds to Ce-fkh-1. First, extrachromosomal arrays carrying either the
cosmid F38A6, which carries Ce-fkh-1, or a 16.7-kb PCR
fragment spanning the Ce-fkh-1 locus can rescue homozygous
pha-4 mutants (Fig. 1A). Second, antisense
Ce-fkh-1 RNA injected into wild-type hermaphrodites causes
embryos and larvae to arrest with a weak pha-4 phenotype (see
Materials and Methods). Third, three EMS-induced pha-4 alleles harbor mutations within Ce-fkh-1 (Fig. 1B). The
Ce-fkh-1 locus generates three mRNAs, which are predicted to
encode three proteins of 506, 441, and 410 amino acids (Azzaria et al.
1996
). The allele pha-4(q490) carries a nonsense mutation at
amino acid 99 relative to the largest pha-4 isoform and is
predicted to truncate all three proteins severely. Therefore, this
allele, which behaves like a null allele in genetic tests (Mango et al.
1994a
), is likely to be a molecular null as well. The other two
sequenced alleles, n2498 and q487, encode
nonsense mutations at positions 250 and 310, respectively. These data
show that pha-4 is encoded by Ce-fkh-1.
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To determine when and where PHA-4 protein is expressed, we designed a
polyclonal antibody that recognizes the PHA-4 carboxyl terminus. This
antibody is specific, as no staining is observed in
pha-4(q490) null embryos (Fig. 2A) or after
preincubation with the immunizing peptide (Materials and Methods). We
observe PHA-4 in the nuclei of cells destined to form the digestive
tract. At the 4E stage, weak expression is detected in 8 MS
great-granddaughters and 10 ABa descendants (ABaraaaa/p,
ABaraapa/p, ABarapaa/p,
ABalpaaa/p, ABalpapa/p) that each produce
pharyngeal cells, as well as nonpharyngeal cells (Fig. 2B; we have
staged embryos according to the number of E-derived midgut cells; see
Fig. 3A for a diagram of the cell lineage). We also
detect faint expression in the four midgut precursors. Brighter
staining is observed in 6-8 MS-derived and 16-18 ABa-derived cells
after the next cell division (MSaaaa/p,
MSaapa/p, MSpaaa/p, MSpapa/p;
Fig. 2C). Soon thereafter, at the 8-12E stage, PHA-4 is first observed
in the rectal precursors. Expression is maintained in all pharyngeal,
midgut, and rectal cells throughout embryogenesis. A similar pattern
has been seen by J. Kalb, K. Lau, B. Goszczynski, T. Fukushige, D. Moons, P. Okkema, and J. McGhee (pers. comm.). In summary, PHA-4
expression defines the digestive tract during embryogenesis. The
initiation of bright expression at the 8E stage corresponds to the time
when the pharyngeal precursors are born. These cells are destined to
produce only pharyngeal cells. However, they are not restricted to any
particular cell type within the pharynx, consistent with
pha-4's proposed global role in specifying pharynx identity
(Sulston et al. 1983
; Mango et al. 1994a
).
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pha-4 is required to establish the pharyngeal precursors
We used lineage analysis to show that pha-4 function is
required by the 8E stage in development. Previous studies demonstrated that pha-4 mutants lack a pharynx (Mango et al. 1994a
). Here
we investigate the pha-4 mutant phenotype during early
developmental stages and show that pha-4 function is required
for the earliest signs of pharyngeal development during embryogenesis.
In the wild type, the pharyngeal precursors congregate at the ventral
midline, where they ingress, beginning at the 4-8E stage (Fig. 2G). In pha-4 embryos, ingression is delayed or aborted so that most
of these cells remain on or near the ventral surface. In addition, whereas wild-type pharyngeal precursors cluster into a column as they
gastrulate, this process usually fails in pha-4 mutants (Fig.
2H). All other embryonic blastomeres behave normally at this time,
including midgut cells (4/4 embryos lineaged completely to the 8E stage). Thus, pha-4 activity is required for the
proper migration and possibly adhesion of the pharyngeal precursors by the 4-8E stage.
In the absence of pha-4 function, pharyngeal cells adopt an
ectodermal fate. Staining with an antibody that recognizes LIN-26, a
zinc-finger protein expressed in epidermis and neuronal support cells
(Labouesse et al. 1994
, 1996
), shows that excess numbers of LIN-26+
cells are made in pha-4 mutants (M. Labouesse and S. Mango,
unpubl.; see also Chanal and Labouesse 1997
). To determine the source
of these cells, we allowed individual blastomeres to develop after all
other blastomeres were killed with a laser microbeam. This experiment
demonstrated that excess LIN-26+ cells were made by isolated ABa and
MS blastomeres, whereas their sister cells, ABp and P2, were unaffected
(Fig. 3). Therefore, cells that would become part of the pharynx in a
wild-type embryo, appeared to be transformed into LIN-26+ ectodermal
cells in a pha-4 mutant. We confirmed this conclusion by
following the late cell lineages of ABa and MS in pha-4
embryos. The terminal cell divisions and programmed cell deaths were
altered in the cell lineages that would normally generate pharyngeal
cells, suggesting that these cells no longer had pharynx identity. For example, in wild-type embryos, ABaraapapaa and ABaraapppaa divide to
generate one daughter that dies and one pharyngeal neuron (Sulston et
al. 1983
). In pha-4 embryos, ABaraapapaa and ABaraapppaa
arrested without undergoing the terminal cell division
(2/2 embryos followed). In addition, no programmed cell
deaths were observed for ABalpaaapap, ABarapaaapp, or MSaaappa
(2/2 embryos examined for each cell).
The new cell lineage patterns observed in pha-4 embryos did not resemble a different branch of the wild-type lineage. Normally, individual sublineages can be identified by the total number of cell divisions within the lineage (e.g., 8, 9, or 10 for AB-derived blastomeres), the pattern of programmed cell deaths and the morphology of individual cells. In pha-4 embryos, AB-derived cells divided nine times and had few programmed cell deaths, unlike any specific sublineage in wild-type embryos. Thus, pha-4 mutant cells lost their pharyngeal lineage characteristics without adopting a pattern that mimicked another wild-type lineage. This result is consistent with pha-4's involvement in establishing pharyngeal fate rather than a particular cell lineage.
pha-4 can specify pharyngeal fate
Expression of ectopic pha-4 is sufficient to confer
pharynx identity to embryonic blastomeres. We used a heat shock
promoter (Jones et al. 1986
; A. Fire, pers. comm.) to express PHA-4
throughout the embryo. By Nomarski optics, all manipulated embryos
arrested with a large pharynx-like organ, bounded by a basement
membrane. In addition, these embryos failed to undergo normal
morphogenesis and contained fewer epidermal cells or body wall muscles.
We confirmed these observations by staining for pharyngeal muscles and
marginal cells, which are generated by multiple branches of the lineage tree in wild-type animals (Sulston et al. 1983
). Most heat-treated embryos contained at least 50% more pharyngeal muscle cells (Fig. 4A,D) and three times more pharyngeal marginal cells (Fig. 4B,E) compared to the wild type. Conversely, the number of
LIN-26+ epidermal and neuronal support cells was strongly reduced
after heat shock, as was the number of body wall muscles (Fig. 4C,F; Materials and Methods). These effects were only observed with an intact
pha-4 gene and were not seen after heat shock of wild-type embryos or embryos carrying a control plasmid expressing a modified pha-4 construct that lacks the DNA binding domain (Fig. 4).
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Not all embryonic cells were transformed into pharyngeal cells by ectopic pha-4 (Materials and Methods; Fig. 4). The incomplete transformation probably reflects two phenomena. First, cells may only be competent to respond to exogenous pha-4 for a brief period of time. For example, we observed the strongest effects when pha-4 was induced by the mid-4E stage. Induction after the 8E stage, on the other hand, gave rise to healthy L1 larvae with no obvious defects (n > 25 embryos for each stage; data not shown). A second reason for the partial transformation is that PHA-4 activity may be modulated by positive and negative cofactors that are each present in only a subset of embryonic blastomeres. Existence of cofactors could also explain the apparent paradox that ectopic pha-4 can confer pharyngeal identity, but the endogenous gene is normally expressed in the midgut and rectum. We propose that one or more cofactors cooperate with PHA-4 to promote pharynx development, another dampens PHA-4 activity in midgut precursors, and a third functions with PHA-4 to establish rectal cells. This hypothesis is consistent with our observation that midgut development is not inhibited by ectopic pha-4.
Exogenous pha-4 is sufficient to down-regulate LIN26
expression. During normal pharynx development, PHA-4 and LIN-26 are not found in the same cell or cell lineage (Labouesse et al. 1996
; this
work). Therefore, it is unlikely that PHA-4 initiates pharynx formation
by repressing lin-26, which is essential for epidermal and
glial cell development (Labouesse et al. 1994
, 1996
). To test this
idea, we examined the phenotype of embryos lacking both pha-4 and lin-26. Pharynx development was not restored in mutants
carrying null mutations in both genes, suggesting that repression of
lin-26 by PHA-4 is not sufficient for pharynx development (see
Materials and Methods). One facet of maintaining pharynx identity,
however, may be the continual repression of lin-26. Because
pha-4 encodes a DNA-binding protein, it is possible that PHA-4
represses lin-26 transcription directly. Interestingly, there
are two consensus binding sites for HNF-3 within the lin-26
promoter, and these sites are conserved in lin-26 from
Caenorhabditis briggsae (P. Chanal and M. Labouesse, unpubl.).
How might pha-4 govern pharynx fate? One idea is that
pha-4 regulates the proper positioning and migration of cells,
and the new location of cells in pha-4 mutants interferes with
normal pharyngeal development. Alternatively, pha-4 might
specify pharynx fate directly, and the loss of pharyngeal identity in
pha-4 mutants lead to altered behaviors. Two lines of evidence
support the latter hypothesis. First, most embryos with severe defects
in morphogenesis and cell placement still form a pharynx (e.g., Ahnn
and Fire 1994
; Labouesse 1997
; Schnabel and Priess 1997
). Second, the
ectopic pharyngeal cells seen in our heat shock experiments are often located in regions of the embryo that do not normally produce pharyngeal cells. Thus, normal patterns of cell migration, adhesion, and ingression depend on correct pharynx fate specification by pha-4.
Compartmentalization of the gut during development
Our studies suggest that the subdivision of the digestive tract
into foregut, midgut, and hindgut is evolutionarily ancient and relies
on conserved molecular mechanisms. We have shown that pha-4
encodes an HNF-3 homolog necessary to specify pharyngeal and
rectal precursors. In other organisms, HNF-3 proteins have been
implicated in foregut and hindgut development, the equivalent of the
nematode pharynx and rectum. In Drosophila fork head mutants, for example, foregut and hindgut cells are transformed into head sclerite structures, whereas in vertebrates, the absence of
HNF-3
leads to severe abnormalities in the
foregut (for review, see Kaufmann and Knochel 1996
). Moreover, the
nematode nkx2.5 homolog ceh-22 is expressed in
foregut muscle, similar to its murine and Drosophila
counterparts (Okkema and Fire 1994
; Harvey 1996
and references therein;
Okkema et al. 1997
), and end-1, a GATA factor involved in
nematode midgut development, resembles the Drosophila midgut
regulator serpent (Reuter 1994
; Rehorn et al. 1996
; Zhu et al.
1997
). The conserved patterns of expression and phenotype for these
three genes strongly support the notion that the mechanisms that
compartmentalize the digestive tract have been phylogenetically conserved.
The anatomy of the foregut, midgut, and hindgut differs substantially
from animal to animal. This observation implies that homologs of
pha-4 and end-1 regulate different target genes in different animals, either directly or indirectly. Few targets have been
identified, so it is unclear at what point the pathways diverge. Genes
such as ceh-22 (Mango et al. 1994a
; J. Kalb, K. Lau, B. Goszczynski, T. Fukushige, D. Moons, P. Okkema, and J. McGhee, pers.
comm.) and K07C11.10, a paired-box homolog (A. Chisolm, pers. comm.; M. Domeier, and S. Mango, unpubl.), are good
candidates to be regulated by pha-4/HNF-3
proteins in many animals. On the other hand, no obvious match to
lin-26 has been identified in another species, nor to
pha-1, another gene required for C. elegans pharynx
formation and potential PHA-4 target (Schnabel and Schnabel 1990
). In
Drosophila, the HNF-3 homolog fork head
represses trachealess to promote salivary gland development
(Kuo et al. 1996
). At least two trachealess homologs exist in
C. elegans, one of which we have inactivated by RNA
interference. No pharyngeal phenotype was observed (M. Domeier and S. Mango, unpubl.). From this short list of genes it is impossible to
generalize about how HNF-3 proteins produce different
specialized structures in different animals. However, it is interesting
to note that both trachealess and lin-26 appear to be
repressed by HNF-3 homologs. In rats, HNF-3
blocks activation of aldolase B transcription directly, by binding to the promoter (Gregori et al. 1993
, 1994
). These data suggest that PHA-4
and its homologs may function as transcriptional repressors, as well as
activators, to control developmental fates.
Experiments performed half a century ago described the ability of
dissociated organ rudiments to selectively recognize and adhere to
cognate organ cells (Townes and Holtfreter 1955
; Moscona 1957
). This
behavior constitutes a cellular description of organ identity. However,
the underlying molecular mechanisms were unknown. We propose that
pha-4 is an essential component of a transcription-based process that endows pharyngeal cells with organ identity. Regulators of
organ identity may act combinatorially with factors that control positional,
blastomere, or cell type identity to build complex organs and tissues.
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Materials and methods |
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Genetics
C. elegans strains were maintained as described
(Brenner 1974
). Mutations and chromosomal balancers used were
dpy-2(e489) lin-26(mc1), unc-4(e120), mnC1 LGII,
unc-101(sy108) LGIV, fog-2(q71), stu-3(q265),
rol-9(sc148), pha-4(q490), pha-4(q487), pha-4(q500), and
pha-4(n2498) LGV.
For the lin-26;pha-4 double mutant analysis, embryos were collected from dpy-2 lin-26 unc-4/mnC1; fog-2 pha-4(q490)/stu-3 rol-9 mothers, aged, and stained for LIN-26, PHA-4, P granules, and 3NB12. About 15% of embryos produce one to three extra 3NB12+ cells in single pha-4 mutants (n = 120) as well as double pha-4;lin-26 embryos (n = 22).
Molecular biology
RNA interference was performed as described (Guo and Kemphues
1995
) using pE38, which is a nearly full-length pha-4 cDNA. Fifty percent of injected mothers (n = 56) gave rise to
arrested progeny, all of which lacked a pharynx by visual inspection.
Fewer 3NB12+ pharynx muscles and excess LIN-26+ ectoderm were
made by the progeny.
Microinjection rescue (Mello et al. 1991
) was performed using YAC
Y79B4, cosmids, or a PCR fragment amplified from genomic DNA and
containing the equivalent of nucleotides 30-16,703 of F38A6.
To sequence pha-4 mutations, exons and flanking splice sites were amplified from genomic DNA obtained from unhatched pha-4 embryos. Purified PCR products were sequenced by the ABI method. To confirm the original mutation, the relevant fragment was reamplified and sequenced on both strands. Primer sequences are available upon request.
For ectopic PHA-4 expression, the cDNA corresponding to the longest
pha-4 mRNA (pJM33; Azzaria et al. 1996
) was inserted into pPD49.78 to generate plasmid pML422. The control plasmid pML423 was
obtained by deleting the putative PHA-4 DNA-binding domain (DBD) from
pML422. The resulting protein has the sequence IRRHGKVKEREPS across the
DNA-binding region. N2 animals were injected (Mello et al. 1991
), and
integrated lines established. Embryos were placed at 33°C for 30 min
and returned to normal growth conditions. The age of the embryos was
determined by visual inspection. More than 95% of embryos carrying
plasmid pML423 developed normally after heat shock, whereas >80% of
the embryos carrying pML422 failed to undergo morphogenesis and
displayed the phenotypes discussed in the text. Antibody staining
confirmed that PHA-4 was expressed throughout the embryo for at least
10 hr after heat shock.
The average numbers of 3NB12+ pharyngeal muscles were 40 ± 16 after ectopic PHA-4 expression (n = 76), 18.3 ± 1.7 in wild-type heat shock-treated embryos (n = 16), and 18.2 ± 1.6 when the DBD was deleted (n = 21). There were 29 ± 10 pharyngeal marginal cells in the strain carrying HS::pha-4 (n = 21) compared to 9.4 ± 0.9 for the DBD mutant (n = 27). The numbers of LIN-26+ cells were 45 ± 42.0 after ectopic PHA-4 expression (n = 81), 131.2 ± 6.3 in wild-type heat shock-treated embryos (n = 16), and 126.4 ± 5.0 with the DBD deleted (n = 21). We obtained 28 ± 14 (n = 29) body wall muscles using HS::pha-4 as compared to 81 ± 6 (n = 14) with the DBD deleted control.
Antibody production and staining
A peptide consisting of the 18 carboxy-terminal amino acids
[(C)VYQNTLYSSTNPNSAANL] was conjugated to KLH and used to generate affinity-purified rabbit polyclonal antibodies by Quality Controlled Biochemicals. In situ antibody staining was performed as described (Mango et al. 1994a
,b
). Antibodies used were
-LIN-26; pharyngeal muscle antibodies 3NB12 and 9.2.1; the intermediate filament antibody
IF, which recognizes pharyngeal marginal cells; the adherens junction antibody MH27; the body wall muscle antibody NE8-3C6; and
J126, which detects pharyngeal glands, midgut, and rectal-intestinal valve cells (Mango et al. 1994b
; Miller and Shakes 1995
; Labouesse et
al. 1996
; S. Strome, pers. comm.).
Embryo manipulations
Time-lapse recordings were carried out as described (Schnabel et
al. 1997
). Wild-type or fog-2 pha-4(q490)/stu-3
rol-9 embryos, were recorded until the 1.5-fold stage. We followed
all cells to the 350-cell stage in two N2 embryos, three Pha-4 embryos, and one non-Pha-4 embryo (i.e., pha-4/+ or
+/+). For two Pha-4 embryos, we observed the
complete cell lineage pattern for cells that would normally follow a
pharyngeal fate. Pha-4 embryos were identified by the absence of a
pharynx, which is easily scored by late embryogenesis. To generate the
images in Figure 2, G and H, we noted the positions of all cells every
15-20 min using SIMI BioCell software, which can reconstitute the
tridimensional aspect of the embryo (Schnabel et al. 1997
).
Individual cells were destroyed with a laser microbeam as described
(Sulston and White 1980
; Avery and Horvitz 1987
; Mango et al. 1991
)
except that the Micropoint laser system (Photonic Instruments) was
used. After ablation, embryos were allowed to mature and then stained.
The genotype of individual operated embryos was determined by staining
for pharyngeal muscle (ABa or MS; 3NB12) or for rectal valve cells
(ABp; J126). The genotype of P2-derived cells could not be determined;
however, 25% of these embryos are predicted to be pha-4.
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Acknowledgments |
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We thank J. Kalb and J. McGhee for their generosity with reagents and unpublished information and B. Bamber, E. Jorgensen, S. Prescott, H. Roehl, and J. Yost for thoughtful comments on the manuscript. M.L. is grateful to R. Schnabel and J. Vonesch for help setting up the 4D-microscope. We thank P. Reid, C. Thummel, and J. Vonesch for use of their confocal microscopes; A. Coulson, S. Chissoe, A. Fire, and Y. Kohara for numerous DNA clones; C. Mello for rol-9(zu156); the Caenorhabditis Genetics Center for nematode strains, and the Utah Health Sciences Sequencing Facility for DNA analysis. S.E.M. was supported by the Huntsman Cancer Institute Center for Children and the March of Dimes. M.L was funded by CNRS, INSERM, Hopital Universitaire de Strasbourg, and by grants from the European Economic Community (program HCM) and the Ministère de l'Education Nationale de la Recherche et de la Technologie (program ACC-SV4). J.K. was supported by the Howard Hughes Medical Institute and grants from the National Institutes of Health, National Science Foundation, and American Cancer Society.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
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Footnotes |
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[Key Words: C. elegans; fork head; HNF-3; pha-4; organogenesis; foregut development]
Received February 12, 1998; revised version accepted April 28, 1998.
4 Corresponding author.
E-MAIL smango{at}genetics.utah.edu; FAX (801) 581-7796.
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References |
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J.-C. Wang, A. Walker, T. K. Blackwell, and K. R. Yamamoto The Caenorhabditis elegans Ortholog of TRAP240, CeTRAP240/let-19, Selectively Modulates Gene Expression and Is Essential for Embryogenesis J. Biol. Chem., July 9, 2004; 279(28): 29270 - 29277. [Abstract] [Full Text] [PDF] |
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K. Good, R. Ciosk, J. Nance, A. Neves, R. J. Hill, and J. R. Priess The T-box transcription factors TBX-37 and TBX-38 link GLP-1/Notch signaling to mesoderm induction in C. elegans embryos Development, May 1, 2004; 131(9): 1967 - 1978. [Abstract] [Full Text] [PDF] |
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A. K. Walker, Y. Shi, and T. K. Blackwell An Extensive Requirement for Transcription Factor IID-specific TAF-1 in Caenorhabditis elegans Embryonic Transcription J. Biol. Chem., April 9, 2004; 279(15): 15339 - 15347. [Abstract] [Full Text] [PDF] |
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G. Aspock, G. Ruvkun, and T. R. Burglin The Caenorhabditis elegans ems class homeobox gene ceh-2 is required for M3 pharynx motoneuron function Development, August 1, 2003; 130(15): 3369 - 3378. [Abstract] [Full Text] [PDF] |
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D. S. Fay, E. Large, M. Han, and M. Darland lin-35/Rb and ubc-18, an E2 ubiquitin-conjugating enzyme, function redundantly to control pharyngeal morphogenesis in C. elegans Development, July 15, 2003; 130(14): 3319 - 3330. [Abstract] [Full Text] [PDF] |
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L. D. Mathies, S. T. Henderson, and J. Kimble The C. elegans Hand gene controls embryogenesis and early gonadogenesis Development, July 1, 2003; 130(13): 2881 - 2892. [Abstract] [Full Text] [PDF] |
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E. Y. Shim, A. K. Walker, Y. Shi, and T. K. Blackwell CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo Genes & Dev., August 15, 2002; 16(16): 2135 - 2146. [Abstract] [Full Text] [PDF] |
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D. Y.R. Stainier A glimpse into the molecular entrails of endoderm formation Genes & Dev., April 15, 2002; 16(8): 893 - 907. [Full Text] [PDF] |
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J. Gaudet and S. E. Mango Regulation of Organogenesis by the Caenorhabditis elegans FoxA Protein PHA-4 Science, February 1, 2002; 295(5556): 821 - 825. [Abstract] [Full Text] [PDF] |
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I. Kostic and R. Roy Organ-specific cell division abnormalities caused by mutation in a general cell cycle regulator in C. elegans Development, January 5, 2002; 129(9): 2155 - 2165. [Abstract] [Full Text] [PDF] |
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T. R. Sarafi-Reinach and P. Sengupta The forkhead domain gene unc-130 generates chemosensory neuron diversity in C. elegans Genes & Dev., October 1, 2000; 14(19): 2472 - 2485. [Abstract] [Full Text] |
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M. E. Domeier, D. P. Morse, S. W. Knight, M. Portereiko, B. L. Bass, and S. E. Mango A Link Between RNA Interference and Nonsense-Mediated Decay in Caenorhabditis elegans Science, September 15, 2000; 289(5486): 1928 - 1930. [Abstract] [Full Text] |
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S. A. Shoichet, T. H. Malik, J. H. Rothman, and R. A. Shivdasani Action of the Caenorhabditis elegans GATA factor END-1 in Xenopus suggests that similar mechanisms initiate endoderm development in ecdysozoa and vertebrates PNAS, April 11, 2000; 97(8): 4076 - 4081. [Abstract] [Full Text] [PDF] |
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