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Vol. 14, No. 18, pp. 2344-2357, September 15, 2000
1 Laboratory of Cell and Developmental Biology, Graduate School of Biosciences, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan; 2 School of Life Science, Tokyo University of Pharmacy, Hachiooji, Tokyo 192-0355, Japan; 3 Tokyo Metropolitan Institute of Medical Science, Bunkyo-ku, Tokyo 113-8613, Japan; 4 CREST Research Project, Japan Science and Technology Corporation, Japan
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ABSTRACT |
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Inactivation of cyclin B-Cdc2 kinase at the exit from M phase depends on the specific proteolysis of the cyclin B subunit, whereas the Cdc2 subunit remains present at nearly constant levels throughout the cell cycle. It is unknown how Cdc2 escapes degradation when cyclin B is destroyed. In Xenopus egg extracts that reproduce the exit from M phase in vitro, we have found that dissociation of the cyclin B-Cdc2 complex occurred under conditions where cyclin B was tethered to the 26S proteasome but not yet degraded. The dephosphorylation of Thr 161 on Cdc2 was unlikely to be necessary for the dissociation of the two subunits. However, the dissociation was dependent on the presence of a functional destruction box in cyclin B. Cyclin B ubiquitination was also, by itself, not sufficient for separation of Cdc2 and cyclin B. The 26S proteasome, but not the 20S proteasome, was capable of dissociating the two subunits. These results indicate that the cyclin B and Cdc2 subunits are separated by the proteasome through a mechanism that precedes proteolysis of cyclin B and is independent of proteolysis. As a result, cyclin B levels decrease on exit from M phase but Cdc2 levels remain constant.
[Key Words: cyclin B-Cdc2; proteasome; cell cycle; protein unfolding; Xenopus egg extracts]
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Introduction |
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The cyclin B-Cdc2 kinase is a universal
regulator of M phase (for review, see Nurse 1990
; Nigg 1995
). Its
activation induces entry into M phase and its inactivation is necessary
for exit from M phase. The activity of cyclin B-Cdc2 kinase is
regulated primarily by the formation of a complex between the catalytic Cdc2 subunit and the cyclin B regulatory subunit. This complex is
stabilized by phosphorylation of Cdc2 on Thr 161, and is kept inactive
by inhibitory phosphorylation of Cdc2 on Thr 14 and Tyr 15 (for review,
see Nigg 1995
). The amount of Cdc2 remains relatively constant
throughout the cell cycle, whereas cyclin B accumulates during
interphase, reaching a peak at metaphase, and is suddenly destroyed at
the exit from M phase (for review, see King et al. 1996
; Townsley and
Ruderman 1998
). The differences in the stability of Cdc2 and cyclin B
at the end of M phase is seen even though the two proteins are tightly
associated in a complex prior to cyclin B degradation. Although it has
not been previously demonstrated, it is probable that the cyclin
B-Cdc2 complex must dissociate prior to the degradation of cyclin B
subunit so that Cdc2 might escape degradation. However, when the
dissociation of cyclin B and Cdc2 takes place and the actual steps
involved in the regulation of this dissociation are not known.
The degradation of the mitotic B-type cyclins is performed by
ubiquitin-proteasome-mediated proteolysis. The N-terminal region of
cyclin B contains a conserved motif called the destruction box, which
serves as a signal for ubiquitination and is necessary for cell
cycle-regulated proteolysis (Glotzer et al. 1991
). The formation of
ubiquitin conjugates requires the concerted activity of a series of
enzymes that first activate ubiquitin (E1) and then recognize and
transfer ubiquitin (E2 and E3) to proteins destined for turnover (for
review, see Hershko and Ciechanover 1998
). Cyclin B is
polyubiquitinated by a specific E3, the multicomponent 20S complex
known as the APC/C (anaphase-promoting complex/cyclosome; for review,
see Townsley and Ruderman 1998
). Neither the activities of E1 nor a
specific E2 (E2-C or UBC10) for cyclin B ubiquitination change during
the cell cycle (Hershko et al. 1994
; King et al. 1995
; Sudakin et al.
1995
), but the E3-like activity of the APC/C is the target of cell
cycle-dependent regulation depending on association with Cdc20 (for
review, see Townsley and Ruderman 1998
; Morgan 1999
). Although the
APC/C-dependent polyubiquitination of cyclin B alone may occur in an in
vitro reconstitution system (King et al. 1995
), it normally occurs in
vivo in the cyclin B-Cdc2 complex. However, it has not been determined
whether the polyubiquitination by the APC/C is involved in dissociation
of the cyclin B-Cdc2 complex or only in targeting cyclin B for degradation.
Polyubiquitinated proteins that are destined for turnover are
recognized and degraded by the 26S proteasome (for review, see Baumeister et al. 1998
; Rechsteiner 1998
). The 26S proteasome can be
divided into three subcomplexes. A core subcomplex, the 20S proteasome,
is a cylindrical stack consisted of four rings and exhibits proteolytic
activity. Each end of the 20S cylinder is capped with another
subcomplex, the 19S complex. Proteolytically active sites of the 20S
cylinder face an interior chamber that can be entered only through a
narrow pore at either end (for review, see Baumeister et al. 1998
).
Because folded proteins cannot reach this chamber, the 19S complex is
thought to be involved in substrate unfolding in addition to
recognition of polyubiquitin chain (Glickman et al. 1998
). Degradation
of polyubiquitinated cyclin B should be executed by the 26S proteasome,
and, accordingly, Cdc2 should be dissociated from cyclin B to escape
degradation. It remains unclear, however, whether the proteasome is
responsible for the dissociation of the cyclin B-Cdc2 complex prior to
cyclin B proteolysis.
Similar to the case of the cyclin B-Cdc2 complex, the proteasome can
selectively degrade a single domain of various complexes, for example,
other types of cyclins in the cyclin-Cdk complex in cell cycle control
(for review, see Koepp et al. 1999
), securin in the securin-separin
complex in sister chromatid separation at the metaphase/anaphase
transition (for review, see Nasmyth et al. 2000
), I
B
in the
I
B
-NF
B complex at the activation of NF
B, and
-catenin
in the
-catenin-GSK3
/APC (adenomatous polyposis coli)/Axin complex in the Wnt pathway
(for review, see Maniatis 1999
). In any case, however, it remains
almost unclear how selective degradation by the proteasome is performed
for a single domain in the complex.
In the present study, we have studied the relationship between the
dissociation of the cyclin B-Cdc2 complex and cyclin B degradation and
have determined how Cdc2 escapes degradation even though it is in a
complex with cyclin B, which is targeted for proteolysis. As an
experimental system, we have used CSF extracts prepared from
unfertilized Xenopus eggs arrested at metaphase II, in which a
high level of cyclin B-Cdc2 kinase activity is retained and cyclin B
destruction can be triggered by the addition of Ca2+ (Murray
1991
). We have found that when MG115, an inhibitor of the proteolytic
activity of the proteasome, is added to these extracts, although there
is a marked inhibition of cyclin B degradation, the cyclin B-Cdc2
kinase activity still decreases. We show that the inactivation of
cyclin B-Cdc2 kinase is due to the dissociation of Cdc2 from cyclin B
by the 26S proteasome through a mechanism that is not dependent on
proteolysis of the cyclin B substrate.
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Results |
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Cdc2 dissociates from cyclin B in the absence of cyclin B destruction
The stability of Cdc2 protein at the time of cyclin B destruction
could be explained in two ways. One possible explanation is that a
proteolytic cleavage within the cyclin box in cyclin B, which is
required for the association of cyclin B with Cdc2 (Kobayashi et al.
1992
; Lees and Harlow 1993
), separates Cdc2 from cyclin B without
degradation of Cdc2. A second possibility is that Cdc2 could be
released by some unknown mechanisms prior to, and independent of,
cyclin B destruction. To address whether proteolytic activity is
indispensable for dissociation of the cyclin B-Cdc2 complex, we
utilized extracts prepared from unfertilized Xenopus eggs that
are arrested at meiotic metaphase II [cytostatic factor-arrested (CSF)
extracts; Murray 1991
]. Addition of calcium to the extracts induces
cyclin B destruction through the ubiquitin-APC/C-proteasome pathway,
leading to the inactivation of cyclin B-Cdc2 kinase (Glotzer et al. 1991
).
A peptide-aldehyde, MG115 (carbobenzoxyl-leucinyl-leucinyl-norvalinal-H, also
called Z-LLnV), has been shown to be a potent inhibitor of the chymotryptic
site in the 20S proteasome and calpine (Rock et al. 1994
). We examined whether
MG115 could block the proteolysis of cyclin B in Xenopus egg
extracts. In control extracts, to which calcium was added without
MG115, cyclin B2 began to decrease within 10 min and was undetectable
by 20 min (Fig. 1A, lanes 3-6). In
contrast, the addition of 0.5 mM MG115 10 min prior to calcium addition
markedly inhibited the destruction of cyclin B2 (Fig. 1A, lanes 7-10).
Because the same concentration of the calpine inhibitor Z-LLH had no
effect on cyclin B2 degradation (Fig. 1A, lanes 11-14), the inhibition
by MG115 is in all likelihood due to the inhibition of the proteasome.
Although ubiquitinated forms of cyclin B2 were not seen when the
proteolytic activity of the proteasome was blocked with MG115, this may
be due to the isopeptidase activity in Xenopus egg extracts
(Mahaffey et al. 1993
).
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Even though cyclin B destruction was prevented in the presence of
MG115, surprisingly, we found that H1 kinase activity fell within 10 min of calcium addition (Fig. 1B). The rate and extent of cyclin
B-Cdc2 kinase inactivation were similar to those in control extracts
to which only DMSO had been added. We suspected that a reason for the
inactivation of cyclin B-Cdc2 kinase in the presence of MG115 may have
been the dissociation of Cdc2 from cyclin B. To examine this
possibility further, we first tried to immunoprecipitate cyclin B with
its antibodies; however, this immunoprecipitation was unsuccessful.
Because these antibodies could readily immunoprecipitate cyclin B-Cdc2
from CSF extracts, these results suggest that cyclin B is in an unusual
state in MG115-treated extracts (see Fig. 5, below). Next, we incubated extracts with Suc1-Sepharose, which absorbs Cdc2 and Cdc2-associated polypeptides from extracts (Dunphy et al. 1988
), and analyzed the bound
proteins with immunoblots. As shown in Figure 1C (lanes 7-10), the
addition of calcium in the presence of MG115 led to a significant
decrease in the amount of cyclin B2 that was associated with Cdc2, and
no cyclin B2 was detectable in Suc1 precipitates at 20 min. Despite the
decrease in the amount of cyclin B that was associated with Cdc2 after
calcium addition, the total amount of cyclin B2 remained almost the
same before and after calcium addition. In parallel, a fraction of Cdc2
shifted to a lower mobility form, possibly due to dephosphorylation of
Thr 161 (Fig. 1C, bottom). A similar decrease in the amount of
Cdc2-associated cyclin B was also seen when a Myc-tagged version of
Cdc2 was immunoprecipitated from extracts (see Fig.
2B, below). Moreover, cyclin B1 behaved identically to cyclin B2 in the presence of MG115 (data not shown). Similar results were obtained with another proteasome inhibitor, MG132
(Rock et al. 1994
) (data not shown). Because we have never observed
an effect of MG115 in CSF extracts in the absence of calcium addition,
these results demonstrate that Cdc2 dissociates from cyclin B in the
absence of cyclin B degradation in response to a stimulus that
causes the exit from metaphase and that the proteolytic activity
of the proteasome is not required for the dissociation.
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Thr 161 dephosphorylation is unlikely to be necessary for the dissociation of cyclin B-Cdc2
Because the phosphorylation at Thr 161 of Cdc2 is required for
its catalytic function and is essential for its stable binding to
cyclin (for review, see Morgan 1995
), dephosphorylation at Thr 161 could, conceivably, be the cause of the dissociation of the cyclin
B-Cdc2 complex. If so, the constitutive phosphorylation of Thr 161 should keep Cdc2 and cyclin B in a stable complex under the
experimental conditions described in Figure 1. To examine this
possibility, we replaced Thr 161 with glutamic acid (E), which
mimics the constitutively phosphorylated state. mRNAs encoding Myc-tagged versions of both wild-type and mutant human Cdc2 (hCdc2-wt and hCdc2-T161E) were translated in reticulocyte lysates in the presence of [35S]methionine. In parallel, we also prepared
radiolabeled human cyclin B1 protein (hcyclin B1) in reticulocyte
lysates. The hcyclin B1-hCdc2 complexes were prepared by mixing
reticulocyte lysates with starfish oocyte extracts that had been
depleted of endogenous starfish Cdc2 and cyclin B with Suc1-Sepharose,
and incubated in the presence of ATP. The depleted oocyte extracts
provided a source of CDK-activating kinase (CAK ) for the
phosphorylation of hCdc2-wt on Thr 161 (Fesquet et al. 1993
). We
confirmed the binding of hCdc2 and hcyclin B1 by immunoprecipitation
with antibodies against the Myc epitope and hcyclin B1 (data not shown;
see also Fig. 2B, lanes 1,4).
When the hcyclin B1-Myc-hCdc2 complexes were added to CSF extracts, hcyclin B1 bound to either wild-type or mutant hCdc2 was stable during a 30-min incubation in the absence of calcium (data not shown). The addition of calcium to the control CSF extracts caused the complete degradation of hcyclin B1 associated with both hCdc2s within 20 min (Fig. 2A). However, in the presence of MG115, hcyclin B1 showed little degradation after calcium addition, but again the amount of hcyclin B1 that was recovered by anti-Myc antibody was significantly decreased for both Myc-hCdc2-wt and Myc-hCdc2-T161E (Fig. 2B). The extent of dissociation of hcyclin B1 was almost similar for both hCdc2-wt and hCdc2-T161E. It is thus likely that the dephosphorylation of Cdc2 on Thr 161 is not required for either cyclin B degradation or dissociation of the cyclin B-Cdc2 complex.
Dissociation of cyclin B-Cdc2 depends on functional destruction box of cyclin B
The destruction box located near the N terminus of cyclin B plays a
crucial role in targeting cyclin B for destruction (Glotzer et al.
1991
). We examined whether the destruction box is required for
dissociation of the cyclin B-Cdc2 complex. A peptide coding the first
108 amino acids of Xenopus cyclin B1 [Nt-B(wt)] was produced
and added to CSF extracts to compete with the destruction box of
endogenous cyclin B. As a control, CSF extracts were mixed with either
buffer alone or the R36S version of Nt-B(wt) [Nt-B(R36S)], which is
not recognized by the cyclin B destruction system (Glotzer et al.
1991
). In contrast to control extracts, when calcium was added to CSF
extracts containing Nt-B(wt), cyclin B2 degradation was prevented and
the H1 kinase activity, an indicator of the association between Cdc2
with cyclin B2, remained high (Fig. 3A). In
fact, Suc1 precipitations confirmed that cyclin B2 remained bound to
Cdc2 under these conditions (Fig. 3A, middle).
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In other experiments, 35S-labeled human cyclin B1 (hcyclin
B1) derivatives lacking a functional destruction box were synthesized in reticulocyte lysates: hcyclin B1-
N86 (
N86) in which
residues 1-86 were deleted from hcyclin B1, and hcyclin B1-Dm (Dm) in
which the invariant Arg and Leu residues in the destruction box of
hcyclin B1 were mutated to Ala (Glotzer et al. 1991
). These products
were mixed with 35S-labeled Myc-tagged Cdc2 to prepare the
cyclin B-Cdc2 complexes. CSF extracts were mixed with these complexes,
and then with calcium either in the absence (Fig. 3B, top) or in the
presence (Fig. 3B, middle and bottom) of MG115. Both hcyclin B1-
N86
and hcyclin B1-Dm were completely stable after the addition of calcium
and were still associated with Myc-hCdc2. These observations indicate that the presence of a functional destruction box is essential for
dissociation of the cyclin B-Cdc2 complex.
Cdc2 remains associated with ubiquitinated cyclin B
Because both the ubiquitination of cyclin B by the APC/C and the
dissociation of the cyclin B-Cdc2 complex are dependent on a
functional destruction box, the above results suggest that
ubiquitination of cyclin B may be required for dissociation of the
cyclin B-Cdc2 complex. To examine whether ubiquitination of cyclin B
is sufficient for the dissociation, we performed in vitro
ubiquitination of cyclin B that is associated with Cdc2 (see Kotani et
al. 1999
). To prepare a substrate for ubiquitination, Sf9 cells were
infected with baculoviruses encoding mouse GST-cyclin B1 and Cdc2, and the GST-cyclin B1-Cdc2 complex was recovered from cell lysates by
glutathione-Sepharose. As an APC/C fraction, anti-Cdc27
immunoprecipitates were recovered from Xenopus egg extracts
that were arrested at anaphase by the addition of both calcium and the
nondegradable cyclin B fragment to CSF extracts (see Glotzer et al.
1991
). Then, the GST-cyclin B1-Cdc2 complex was ubiquitinated in
vitro with biotinylated ubiquitin, bacterially expressed recombinant
mouse E1 and UBC10 (E2), and the anti-Cdc27 immunoprecipitates (APC/C). Ubiquitin conjugates were detected by the ECL avidin-peroxidase method. As shown in Figure 4A, similar
amounts of highly ubiquitinated cyclin B1 were recovered by
glutathione-Sepharose (lane 1) and by Suc1-Sepharose (lane 2),
indicating that ubiquitinated cyclin B1 remains associated with Cdc2.
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Similar results were obtained using Xenopus egg CSF extracts.
When biotinylated ubiquitin was added to CSF extracts to detect ubiquitination of cyclin B, we found low levels of ubiquitination on
cyclin B even in extracts arrested at metaphase II (Fig. 4B, lanes
1,5). After the release of the arrest by addition of calcium and until
the completion of cyclin B degradation, a large increase in the level
of ubiquitinated cyclin B was detectable by the biotin-avidin system
(Fig. 4B, lanes 2-4 and 6-8) and at lesser extent by anti-cyclin B
antibody (data not shown). These ubiquitinated forms of cyclin B were
recovered in Suc1 precipitates as well as in anti-cyclin B2
immunoprecipitates (Fig. 4B), indicating that Cdc2 remains associated
with ubiquitinated cyclin B. Although it has been reported that Suc1
can bind to the proteasome (Kaiser et al. 1999
), this is not the case
in Xenopus egg extracts (data not shown), ruling out a
possibility that the Suc1 association of cyclin B is via the
proteasome. These results indicate that while ubiquitination of cyclin
B might be necessary for the dissociation of the cyclin B-Cdc2
complex, it is not sufficient.
Cyclin B tethered by the 26S proteasome is not associated with Cdc2
The foregoing results suggest that the dissociation of the cyclin B-Cdc2 complex might occur after polyubiquitination of cyclin B but before its degradation. We examined the state of cyclin B that had been dissociated from Cdc2 but whose degradation was prevented by MG115 (see Fig. 1C). CSF extracts were treated with calcium in the presence of MG115 to dissociate the cyclin B-Cdc2 complex (MG115-treated extracts), and then the MG115-treated extracts were fractionated by gel filtration on Superose 6. Much of the cyclin B2 was recovered in fractions where complexes of several hundred kilodaltons eluted and were distinct from the fractions containing the majority of Cdc2 (Fig. 5A, bottom). In contrast, both cyclin B and a fraction of Cdc2 co-eluted around 100 kD when control, untreated CSF extracts (MII extracts) were applied to the same column (Fig. 5A, top). A comparison of these gel filtration patterns suggests that cyclin B in MG115-treated extracts is associated with some macromolecular components other than Cdc2. Then, high molecular weight fractions containing cyclin B2, but not Cdc2, were pooled and fractionated on an anion-exchange Mono Q column. Each fraction was assayed for 26S proteasome activity and by immunoblots with antibodies against 20S and 19S (MSS1 and p58) components of the proteasome and against Cdc27, a key component of APC/C. As shown in Figure 5B, a significant amount of cyclin B2 co-eluted with the 26S proteasome activity but not with Cdc27. Both the 20S and the 19S components of the proteasome were detected in fractions containing the 26S proteasome activity, indicating that the 26S proteasome is actually present in these fractions and that the 26S proteasome is possibly associated with cyclin B2. At present we do not know the significance of the cyclin B2 that did not co-elute with the 26S proteasome.
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Further evidence for the interaction between the 26S proteasome and cyclin B was obtained by immunoprecipitation of the 20S proteasome from MG115-treated extracts or MII extracts. Immunoprecipitates recovered with an anti-20S proteasome antibody were examined by immunoblotting with anti-cyclin B2 antibody. S5a, a component of the 19S regulatory complex, co-precipitated with the 20S proteasome with an approximately equal stoichiometry from both MII and MG115-treated extracts (Fig. 5C, bottom). This result implies that the 19S regulatory component is almost equally associated with the 20S proteasome to form the 26S complex in both MII and MG115-treated extracts and that immunoprecipitation with the anti-20S proteasome antibody is able to recover the 26S proteasome (see also Fig. 6A). As shown in Figure 5C, anti-20S proteasome immunoprecipitates from MG115-treated extracts contained a significant amount of cyclin B2 but not Cdc2, while those from MII extracts contained neither cyclin B2 nor Cdc2. Taken together, the results in Figure 5B and C support the concept that cyclin B is not associated with Cdc2 in MG115-treated extracts, but is associated with the 26S proteasome. The association of cyclin B with the 26S proteasome may explain why cyclin B could not be immunoprecipitated from MG115-treated extracts by anti-cyclin B antibodies.
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The 26S proteasome is necessary for dissociation of cyclin B-Cdc2
All of the foregoing results prompted us to examine a possible involvement of the proteasome in the dissociation of the cyclin B-Cdc2 complex. To address this question, the proteasome was immunodepleted from CSF extracts using anti-20S proteasome antibodies. When compared with the extracts that were mock depleted with a control IgG, those depleted with anti-20S proteasome antibodies had <5% of the 20S proteasome and of the 19S particle, identified by antibodies against MSS1 and TBP1, remaining (Fig. 6A, left). In agreement with the protein levels, the immunodepleted extracts lost >98% of the 26S proteasome activity (Fig. 6A, right). Therefore, because of the shared proteins between the 26S and 20S proteasomes, the anti-20S proteasome immunodepletion from Xenopus egg extracts was able to remove most of the 26S proteasomes.
When calcium was added the 20S/26S proteasome-depleted CSF extracts in the presence of MG115, no significant decrease was observed in cyclin B2 levels of whole extracts and in Suc1 precipitates, or in the histone H1 kinase activity (Fig. 6B), indicating that Cdc2 was still associated with cyclin B2. These results were in marked contrast with those in mock-depleted extracts where an obvious decrease occurred both in cyclin B2 levels of Suc1 precipitates and in histone H1 kinase activity, as already seen in Figure 1B and C. Thus the 26S proteasome seems to be required for the dissociation of Cdc2 from cyclin B.
Next, we carried out restoration experiments by adding back the 26S or 20S proteasomes to the 20S/26S proteasome-depleted extracts. The 26S proteasomes were recovered from CSF extracts by anti-20S proteasome antibody-coupled beads, while the 20S proteasomes were recovered by the same beads but from CSF extracts that had been incubated with hexokinase and glucose to deplete ATP and, thereby, convert the 26S proteasomes into 20S proteasomes (see Materials and Methods). In fact, the 26S proteasome precipitates were recognized on immunoblots by the antibodies against the 20S proteasome and several subunits (S5a, TBP1, and MSS1) of the 19S regulatory particle (Fig. 7A). Moreover, they exhibited high levels of peptidase activity both in the presence and in the absence of SDS (Fig. 7B). In contrast, the 20S proteasome precipitates contained approximately the same levels of the proteins common to 26S and 20S proteasomes but significantly reduced levels of proteins from the 19S particle which is only present on 26S proteasomes (Fig. 7A). The 20S proteasomes also lost about 80% of their SDS-insensitive (but not SDS-sensitive) peptidase activity (Fig. 7B) when compared with the 26S proteasomes. The 26S proteasome beads were added back to 20S/26S proteasome-depleted CSF extracts, and then calcium was added in the presence of MG115. In this reconstitution experiment, both the dissociation of Cdc2 from cyclin B and the decrease in histone H1 kinase activity were again observed (Fig. 7B, top, lanes 5-8 and bottom), indicating that the 26S proteasomes restored the dissociation capacity to the depleted extracts. In contrast, the addition of control mock beads (Fig. 7B, top, lanes 1-4) or of the 20S proteasome beads failed to restore the capacity to dissociate Cdc2 from cyclin B, and did not inactivate the histone H1 kinase of the depleted, MG115-treated extracts (Fig. 7B, top, lanes 9-12). Although the effect of the addition of the 19S particle to the 20S/26S proteasome-depleted extracts would be intriguing, this could not be done because of the inability of obtaining the 19S particle at the high concentration found in CSF extracts. Nevertheless, our results demonstrate clearly that 26S proteasomes, and not 20S proteasomes, are likely to be involved in the dissociation of the cyclin B-Cdc2 complex during its inactivation on exit from M phase.
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Discussion |
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By using Xenopus egg extracts that reproduce exit from M phase, the present study demonstrates that Cdc2 dissociates from cyclin B in the absence of cyclin B destruction, and that the dissociation depends on the presence of the 26S proteasome but not on its proteolytic activity. These observations imply that the 26S proteasome is involved in not only the destruction of cyclin B but also in the release of Cdc2 from cyclin B by an activity other than proteolysis. These results may explain why Cdc2 escapes from degradation upon destruction of cyclin B at exit from M phase, even though it is in a tight complex with cyclin B prior to the exit from M phase.
Merit of Xenopus egg extracts system
Although the present results were obtained in Xenopus egg
extracts, dissociation of Cdc2 from cyclin B and loss of H1 kinase activity were also observed in starfish oocytes that had been treated
with MG115 at exit from metaphase of meiosis I (data not shown). These
observations are in marked contrast with previous reports that the
proteasome inhibitor causes metaphase arrest accompanied by elevated
levels of H1 kinase activity (i.e., no dissociation of cyclin B-Cdc2)
in mammalian tissue culture cells and in plant cells (Sherwood et al.
1993
; Genschik et al. 1998
).
How could the discrepancy between our results and those in somatic
cells be explained? It has been well established that there is a
dual control for mitotic exit, sister chromatid separation and Cdc2
inactivation, and that both are under the control of the
APC/C-proteasome system (for review, see Townsley and Ruderman 1998
;
Zachariae and Nasmyth 1999
). While securin (Pds1/Cut2) binds and
prevents separin (Esp1/Cut1) from destroying sister chromatid cohesion, thereby maintaining metaphase (for review, see Nasmyth et
al. 2000
), the destruction of securin by the APC/C-proteasome in a
Cdc20/Fizzy-dependent manner liberates separin, permitting sister
chromatid separation. In budding yeast, at least, securin is also
involved in preventing the activation of Cdc14, which activates the
destruction of cyclin B by the APC/C-proteasome through the
dephosphorylation of Cdh1/Hct1, thus coupling sister chromatid
separation with Cdc2 inactivation (Cohen-Fix and Koshland 1999
;
Shirayama et al. 1999
; Tinker-Kulberg and Morgan 1999
; for review, see
Prinz and Amon 1999
). However, even if the above coupling system
functions normally, one might anticipate that the inhibition of
proteolytic activity of the proteasome could still liberate separin
from securin, much like Cdc2 from cyclin B in the present study,
resulting in the dissociation of sister chromatids, and could also
destroy the inhibitory effect of securin on Cdc14, resulting in the
inactivation of Cdc2. If so, then the metaphase arrest caused by the
proteasome inhibitor in somatic cells might suggest the presence of
another proteolysis-dependent system that couples the pathway for
dissociation of sister chromatid cohesion with that for destruction of
cyclin B.
In contrast, securin destruction is not required for progression of
the embryonic cell cycle in Xenopus egg extracts but is necessary for sister chromatid separation (Zou et al. 1999
),
implying that securin degradation and cyclin B destruction are
independent. The independence of these two events might constitute the
molecular basis for the lack of spindle assembly checkpoint control in
Xenopus egg extracts and starfish oocytes (for review, see
Murray and Kirschner 1989
). Accordingly, even in the absence of the
proteasome's proteolytic activity, the pathway toward cyclin B
destruction should be able to proceed separately in Xenopus
egg extracts, resulting in dissociation of Cdc2 from cyclin B. It is
likely that the absence of a spindle assembly checkpoint control in
Xenopus egg extracts contributed to our ability to obtain the
results we have presented here.
Dissociation of Cdc2 depends on cyclin B ubiquitination rather than Thr 161 dephosphorylation of Cdc2
Because previous studies demonstrated that the phosphorylation of
Thr 161 on Cdc2 increases the stability of the cyclin B-Cdc2 complex
(for review, see Morgan 1995
), one might have anticipated that the
dephosphorylation of Thr 161 might contribute to its dissociation.
However, contrary to this premise, our results suggest a possibility
that dephosphorylation on Thr 161 is not necessary for dissociation of
the cyclin B-Cdc2 complex at exit from M phase (Fig. 2). This
possibility is consistent with the previous report that, in CSF
extracts, okadaic acid prevents both the dephosphorylation of Cdc2 and
the drop in H1 kinase activity, but not cyclin B degradation (Lorca et
al. 1992
). The fact that simply reversing the step that stabilizes the
cyclin B-Cdc2 complex does not cause dissociation of the complex once
it has formed, provides support to the notion that a positive-acting
mechanism releases the two subunits at the end of M phase.
The present results indicate that a functional destruction box is
required for dissociation of cyclin B-Cdc2 (Fig. 3). Considering that
the destruction box in cyclin B is known to be involved in polyubiquitination of cyclin B (Glotzer et al. 1991
), one could postulate that polyubiquitination of cyclin B itself might cause the
release of Cdc2 from cyclin B. In accordance with this notion, it
has been suggested that the polyubiquitin chain helps to unfold the
target proteins (Pickart 1997
). However, in the present study polyubiquitination is not by itself sufficient to dissociate Cdc2 from cyclin B (Fig. 4). We do not know to what extent cyclin B is
unfolded as a result of ubiquitination. Then, what is the role of
the destruction box in the dissociation of cyclin B-Cdc2? Although we cannot exclude the possibility that the destruction box contributes to a function other than polyubiquitination of cyclin B, it is reasonable that polyubiquitination of cyclin B is a way for targeting cyclin B-Cdc2 to the dissociation because the proteasome was required for this dissociation in the present study (Fig. 6) and because a
multi-ubiquitin chain is a well-known targeting signal to the proteasome (Thrower et al. 2000
). Thus, polyubiquitination of cyclin B
is likely to target the complex to the proteasome where Cdc2 is
released from cyclin B. Whether or not ubiquitination also plays a role
in facilitating the disassembly of the complex by the proteasome
remains to be resolved.
Release of Cdc2 from cyclin B by the proteasome
Dissociation of the cyclin B-Cdc2 complex required the 26S
proteasome (Figs. 6 and 7) but not its proteolytic activity, indicating that a non-proteolytic function of the proteasome contributes the
dissociation. On the other hand, in the presence of an excess amount of
recombinant human S5a, which is a multi-ubiquitin chain recognition
component of the 26S proteasome (Deveraux et al. 1994
), neither cyclin
B destruction nor inactivation of Cdc2 kinase occurred in CSF extracts
to which calcium had been added (Deveraux et al. 1995
; A. Nishiyama,
unpubl.). This result implies that the recognition of polyubiquitinated
cyclin B by S5a component of the proteasome is not sufficient to
dissociate Cdc2 from cyclin B, and exogenously added S5a may actually
compete with proteasome-bound S5a for the recognition of
polyubiquitinated cyclin B.
Our results show that the ability to dissociate the cyclin B-Cdc2
complex is dependent on the 26S, but not the 20S, proteasome (Fig. 7).
This dependence implies that at least the 19S (PA700) regulatory
particle may play a key role in the dissociation of the complex. In
fact, the 19S particle carries out a nonproteolytic function in
nucleotide excision repair (Russell et al. 1999
). However, we suspect
that the 19S particle alone may not be sufficient for dissociation of
cyclin B-Cdc2. Ornithine decarboxylase (ODC), which is degraded by the
26S proteasome without ubiquitination (Murakami et al. 1992
), is
sequestered by the proteasome, in a process requiring ATP but not the
proteolytic activity of the proteasome (Murakami et al. 1999
). The 26S
complex, but neither the 20S core particle nor the 19S regulatory
particle alone, are sufficient for the sequestration of ODC. If the
dissociation of Cdc2 from cyclin B occurs in a similar manner, it is
likely that the whole 26S complex, but not the 19S regulatory particle
alone, might accomplish the dissociation. To support this notion, we have attempted in vitro reconstitution experiments using in vitro polyubiquitinated cyclin B-Cdc2 complex and the purified 26S
proteasomes or the 20S or 19S components of the proteasome, but, at
present, have been unsuccessful in dissociating the complex, possibly
because of the low concentration of multi-ubiquitinated cyclin B.
Then, how does the proteasome dissociate Cdc2 from cyclin B? The 19S
regulatory particle is composed of two subcomplexes, the "base" and
the "lid" (Glickman et al. 1998
). The base is located proximal
and the lid distal to the 20S core particle. The lid is essential
for the recognition, and possibly binding, of polyubiquitinated substrate proteins, whereas the base is likely to promote substrate unfolding through its six distinct AAA (ATPases
associated with a variety of cellular
activities)-type ATPase components in a chaperone-like
manner that is independent of polyubiquitin chains (Braun et al. 1999
).
In addition, the 20S proteolytic core is composed of two
- and two
-rings (Baumeister et al. 1998
). The
-rings discriminate
between unfolded and folded proteins, and the
-rings, which
constitute the central catalytic core, can cleave substrates
proteolytically. On the basis of the above and the results presented in
this paper, we propose the following model for degradation of cyclin B
(Fig. 8): Initially, polyubiquitin chains
of cyclin B that have been added by the APC/C tether the cyclin B-Cdc2
complex to the lid of the 19S particle. Then, because of a
chaperone-like function of the base of the 19S particle with the aid of
the
-rings in the 20S component, the tethered cyclin B-Cdc2 complex
is unfolded. Consequently, Cdc2 dissociates from cyclin B, while cyclin
B is translocated into the catalytic core of the 20S component. Lastly,
cyclin B is degraded within the lumen of the 20S component by the
proteolytic activity of the
-rings. At present, however, we can
not discriminate whether Cdc2 is passively separated from cyclin B as a
consequence of cyclin B unfolding or whether Cdc2 is actively
dissociated from the cyclin B-Cdc2 complex by a chaperone-like
activity of the proteasome components.
|
In a strict sense, our results showing that the immunodepletion of the
26S proteasome abolished the dissociation of cyclin B-Cdc2 and that
the immunoprecipitates restored the dissociation (Figs. 6 and 7) imply
that the 26S proteasome itself and/or any component(s) associated with
the 26S proteasome is required for the dissociation. A
proteasome-associated component that could possibly contribute to the
dissociation is Cdc48, also named as valosin-containing protein (VCP),
which is an AAA-type ATPase family member (for review, see Confalonieri
and Duguet 1995
). When the transcription factor NF-
B is activated,
I
B
which is complexed with NF-
B and prevents its nuclear
translocation, is destroyed in a ubiquitin-proteasome-dependent manner
(for review, see Ghosh et al. 1998
; Maniatis 1999
). In this case, it
has been proposed that before the degradation of I
B
, Cdc48 is
involved in the dissociation of polyubiquitinated I
B
from NF-
B
(Dai et al., 1998
). However, it is likely that some additional
component, possibly the proteasome itself, may be necessary for the
Cdc48 function, because Cdc48 itself may be unable to recognize the polyubiquitin chains because it lacks the ubiquitin-binding motif contained in S5a (Young et al. 1998
). On the other hand, a recent report of Thrower et al. (2000)
indicates that the addition of Cdc48
does not contribute to the unfolding activity of the proteasome. Further studies will be required to clarify the role, if any, of Cdc48
in the dissociation of cyclin B-Cdc2.
In conclusion, the present study demonstrates that upon exit from M phase, the proteasome, which will degrade polyubiquitinated cyclin B, separates Cdc2 from cyclin B by a mechanism that is not dependent on the proteasome's proteolytic activity. This mechanism ensures that the regulatory component of the complex is degraded while the catalytic subunit is not, and accounts, in part, for the oscillations in cyclin B and the nonoscillations in Cdc2 abundance during the cell cycle. Paradoxically, the proteasome appears to be responsible for both the degradation of cyclin B and the stability of Cdc2.
| |
Materials and methods |
|---|
|
|
|---|
Preparation of Xenopus egg extracts
CSF-arrested extracts of Xenopus eggs were prepared
according to the method of Murray (1991)
with some modifications.
Unfertilized eggs were dejellied with 2.5% thioglycolic acid-NaOH (pH
8.2), washed with EGTA-extraction buffer (100 mM KCl, 5 mM
MgCl2, 0.5 mM CaCl2, 5 mM EGTA, 20 mM HEPES-KOH at
pH 7.5) containing 50 µg/mL cytochalasin B at 15°C and
transferred to a microcentrifuge tube. Eggs were packed by brief
centrifugation (500g, 10 sec) and after the excess buffer was
removed, the eggs were lysed by centrifugation at 15,000g for
10 min at 4°C. The cytoplasmic fraction between the lipid cap and
sedimented yolk was recovered and clarified by a second centrifugation
at 15,000g for 20 min at 4°C. Egg extracts were
supplemented with ATP and creatine phosphate to final concentrations of
1 mM and 10 mM, respectively, preserved on ice and used within 2 h
after preparation. CSF extracts were activated by the addition of
CaCl2 to a final concentration of 0.6 mM in the presence or absence of 0.5 mM MG115. All incubations of egg extracts were done at 22°C.
Immunodepletion and immunoprecipitation of proteasome from egg extracts
For immunodepletion of 20S/26S proteasomes, 100-µL samples of CSF extracts were treated four times (15 min each, on ice) with 20 µL of protein G-Sepharose beads (Sigma) conjugated with anti-Xenopus 20S proteasome antibodies. For immunoprecipitation of 20S/26S proteasome, 100-µL samples of CSF extracts were diluted with 1.9 mL of either buffer A (20 mM Tris-HCl at pH 7.5, 5 mM MgCl2, 1 mM DTT) supplemented with 2 mM ATP and an ATP-regenerating system (10 mM creatine phosphate and 10 µg/mL creatine kinase) or buffer A supplemented with an ATP-depleting system (10 mM glucose and 1 µg/mL hexokinase) and incubated for 60 min at 37°C. Next, the diluted extracts were treated for 1 h on ice with 6 µg of anti-Xenopus 20S proteasome antibodies conjugated to 10 µl of protein G beads. Protein G beads were then washed three times with buffer A containing 0.15 M NaCl and 0.05% Tween-20, and after equilibration with EB (100 mM KCl, 0.1 mM CaCl2, 5 mM MgCl2, 20 mM HEPES-KOH at pH 7.5) supplemented with 2 mM ATP, added back to the proteasome-depleted extracts.
Fractionation of egg extracts
The cytosolic fraction of egg extracts was obtained by centrifugation at 150,000g for 90 min at 4°C and a 200-µL sample was loaded on a Superose 6 column (HR 10/30) equilibrated with EGTA-extraction buffer supplemented with 1 mM ATP, 1 mM DTT, and 200 mM sucrose. Calibration of the column was performed using thyroglobulin (670 kD), ferritin (440 kD), catalase (230 kD) and ovalbumin (43 kDa) as molecular weight markers. High molecular weight fractions that contained cyclin B, but not Cdc2, were pooled and applied to a Mono Q column (HR 5/5) equilibrated with buffer Q (20 mM Tris-HCl at pH 7.7, 100 mM KCl, 0.1 mM CaCl2, 1 mM MgCl2, 200 mM sucrose, 1 mM ATP, 1 mM DTT), washed with buffer Q and eluted with 15 mL of a linear salt gradient (100-500 mM KCl in buffer Q).
Isolation of cyclin B-Cdc2 complexes from egg extracts
Recombinant Suc1 (p13suc1) was expressed in E. coli,
purified, and coupled to CNBr-activated Sepharose-4B (Pharmacia), as described (Okumura et al., 1996
). To isolate cyclin B-Cdc2 complexes, 5 µL of egg extracts diluted to a total volume of 250 µL with
-GPEB (80 mM
-glycerophosphate, 20 mM EGTA, 5 mM
MgCl2 and 20 mM HEPES-KOH at pH 7.5) containing 0.02% NP-40
was added to 10 µL Suc1-beads and incubated for 2 h at 4°C.
Suc1-beads were washed sequentially with 500 µL of
-GPEB
containing 0.02% NP-40,
-GPEB containing 0.5 M of NaCl and 500 µL of
-GPEB containing 0.02% NP-40.
Preparation of 35S-labeled cyclin B-Cdc2 complexes
Myc-tagged human Cdc2 was constructed by PCR, using a primer with an EcoRI site upstream of the desired start of the Cdc2 protein, and a primer with an XhoI site downstream of a stop codon of Cdc2. The EcoRI-XhoI fragment of Cdc2 was inserted into the pCITE expression vector (Novagen) with a Myc-epitope. A mutant version of human Cdc2 (T161E) was generated using a site-directed mutagenesis system (Mutan K; Takara, Japan), with the oligonucleotide, 5'-GTTCGGGTTTACGAACATGAGGTAGTGACA-3'.
cDNA encoding full-length human cyclin B1 was cloned into the pCITE
expression vector. Arginine and leucine in the destruction box of the
wild type were changed into alanine (cyclin B1-Dm) with an
oligonucleotide, 5'-CGGACTGAGGCCAGCAACAGCTGCTGGGGACATTGG-3' as
described above. Cyclin B1
N86 was constructed by PCR with a primer
with an NcoI site upstream of the desired start of the protein
and a primer with a BamHI site downstream of a stop codon of
cyclin B1. The NcoI-BamHI fragment of cyclin B1 was
cloned into the pCITE vector.
Messenger RNAs encoding full-length human cyclin B1, cyclin B1
N86,
cyclin B1 (Dm), Myc-human Cdc2 and Cdc2 (T161E) were transcribed in
vitro from the pCITE vectors with T7 RNA polymerase. After removal of
the DNA template by digestion with RNase-free DNase, mRNAs were
extracted twice each with phenol and chloroform, recovered by ethanol
precipitation, and resuspended in H2O at a concentration of 1 mg/mL. To increase the efficiency of translation, 2 µL of RNA was
heated for 30 sec at 67°C before in vitro translation in 25 µL
of rabbit reticulocyte lysate containing 1 mCi/mL
[35S]methionine (Amersham).
To obtain 35S-labeled cyclin B1-Cdc2 complexes, reticulocyte
lysates containing cyclin B1 (4.5 µL) and Myc-Cdc2 (1.5 µL)
were added to Suc1-treated starfish oocyte extracts (3 µL)
supplemented with 5 mM MgCl2 and 1mM ATP and incubated for 60 min at 25°C. The mixture was aliquotted, frozen in liquid nitrogen,
and stored at
80°C. Starfish oocyte extracts were prepared as
described (Fesquet et al. 1993
) and treated twice with Suc1-Sepharose
beads (Okumura et al. 1996
) to increase the binding efficiency of
exogenously added cyclin B1 and Myc-Cdc2. To isolate the complexes of
35S-labeled Myc-Cdc2 and 35S-labeled cyclin B1
from starfish oocyte extracts or Xenopus egg extracts to which
the starfish extracts had been added, extracts containing the
35S-labeled proteins were diluted with 3 volumes of EB and
treated with c-Myc (9E10) or human cyclin B1 antibodies (Santa Cruz). The mixture was diluted further with 3 volumes of EB and added to
protein G-Sepharose beads. After rotation for 1 h at 4°C, protein G-Sepharose beads were washed once in low salt buffer (100 mM NaCl, 5 mM EDTA, 1% Triton X-100, 20 mM Tris-HCl at pH 7.4), twice in high
salt buffer (1 M NaCl, 5 mM EDTA, 1% Triton X-100, 20 mM Tris-HCl at
pH 7.4) and again once in low salt buffer. The associated proteins were
eluted with SDS sample buffer. Samples were subjected to SDS-PAGE and
analyzed by an phosphorimage analyzer (Fujix BAS2000; Fuji Photo Film).
Ubiquitination of cyclin B in complex with Cdc2
Recombinant mouse E1, human E2-C, and biotinylated bovine ubiquitin
were prepared essentially as described previously (Funabiki et al.
1997
). The APC/C was isolated using rabbit anti-human Cdc27 antibodies
from CSF extracts that had been activated by the addition of
CaCl2 in the presence of a nondegradable fragment of
Xenopus cyclin B2 (
N85), which maintained a high level of
Cdc2 activity after degradation of the endogenous cyclin B. As a
substrate for ubiquitination, mouse GST-cyclin B1 and Cdc2 were
expressed in a baculovirus system and their complexes were purified
using glutathione-Sepharose 4B (Pharmacia). To perform in vitro
ubiquitination of substrates, a 50-µL reaction mix (50 mM Tris-HCl
at pH 7.4, 5 mM MgCl2, 2 mM DTT, 2 mM ATP), containing 1 µg of mouse E1, 3 µg of human E2-C, APC/C immunoprecipitated
from 50 µL of CSF extracts by the use of 7.5 µL of anti-human
Cdc27-coupled protein A beads (Bio-Rad), 15 µg of biotinylated
bovine ubiquitin and 2 µg of mouse GST-cyclin B1-Cdc2, were
incubated for 30 min at 25°C. Substrates were recovered by
glutathione-Sepharose 4B or Suc1-Sepharose and washed three times.
The samples were subjected to 7.5% SDS-PAGE, and the ubiquitinated GST-cyclin B were detected by the ECL avidin-peroxidase method (Amersham).
Recombinant N-terminal fragments of cyclin B
A peptide containing the N-terminal amino acids (1-108) of Xenopus cyclin B1 was fused to the polyhistidine tag in the pTrcHis plasmid vector (Invitrogen). Arginine in the destruction box of the wild type was changed into serine (R36S) by using the QuickChange site-directed mutagenesis kit (Stratagene) with synthetic primers, 5'-CCAGGGTTGAGACCTAGTACTGCC TTGGGAGACATTG-3', 5'-CAATGTCTCCCAAGGCAGTA CTAGGTCTCAACCCTGG-3'. The polyhistidine-fused proteins were expressed in Escherichia coli BL21, and affinity purified with nickel-agarose beads (His-Bind Resin, Novagen) according to the product manual.
Immunoblotting
Antibodies against TBP1, MSS1, p58, and the Xenopus 20S
proteasome were prepared as previously described (Tanaka et al. 1988
; Kominami et al. 1997
; Tanahashi et al. 1998
). Anti-Xenopus
cyclin B1 and B2 antisera and anti-PSTAIR antibodies were kindly
provided from Dr. J.L. Maller (University of Colorado) and Drs. M. Yamashita and Y. Nagahama (National Institute for Basic Biology,
Japan), respectively. Anti-Cdc27 monoclonal antibody was purchased from MBL (TL-C40920). Anti-human S5a antibody was raised against full-length human S5a expressed in E. coli by the use of the pET system
(Y. Nagai, unpubl.).
All the samples were run on SDS-polyacrylamide gels and blotted onto
an Immobilon membrane (Millipore) according to Towbin et al. (1979)
.
After blocking with 5% skimmed milk, the membrane was incubated with
primary antibodies for 1 h at room temperature. The membrane was then
incubated with alkaline phosphatase-conjugated or horseradish
peroxidase-conjugated secondary antibodies. Reacted proteins were
detected by a BCIP/NTB phosphatase substrate system (KPL) or ECL (Amersham ).
Assays for histone H1 kinase and proteasome activities
For histone H1 kinase assay, egg extracts were quickly frozen in
liquid nitrogen and stored at
80°C. Frozen extracts were thawed
by adding 9 volumes of ice-cold
-GPEB. Ten microliters of diluted
extract was mixed with 20 µL of reaction buffer containing 80 mM
-glycerophosphate (pH 7.4), 20 mM MgCl2, 0.6 mM ATP, 30 µg/mL leupeptin, 30 µg/mL aprotinin, 0.6 mg/mL histone H1 and 1 mCi [
-32P]ATP, and incubated for 30 min at 25°C.
Reactions were stopped by the addition of SDS-sample buffer and boiling
for 2 min. Histone H1 was separated by SDS-PAGE and stained with
Coomassie blue. The band was excised and 32P incorporation
was quantitated in the gel slice by the Cerenkov method. Alternatively,
the gel was autoradiographed with X-ray film (X-OMAT, Kodak) at
80°C. For the proteasome activity assay, protein samples were
examined for their ability to degrade Suc-LLVY-AMC in solution in the
presence of 1 mM ATP or in the absence of 1mM ATP and 0.05% SDS, as
described previously (Murakami et al. 1999
).
| |
Acknowledgments |
|---|
We thank Drs. Mari Iwabuchi for cyclin B mutants, Sayaka Tahara for Myc-tagged constructs, James L. Maller and Yukiko Nagai for antibodies, Hiroyuki Kawahara for invaluable discussion and Manfred J. Lohka for critical reading of the manuscript. This study was supported by the scientific grants from Ministry of Education, Science and Culture, Japan and the CREST Research Project of Japan Science and Technology Corporation to T. K.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
| |
Footnotes |
|---|
Received June 1, 2000; revised version accepted July 27, 2000.
5 Corresponding author.
E-MAIL tkishimo{at}bio.titech.ac.jp; FAX 81-45-924-5738.
Article and publication are at www.genesdev.org/cgi/doi/10.1101/gad.823200.
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