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Vol. 15, No. 10, pp. 1229-1241, May 15, 2001
National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892-2753, USA; 1 Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9038, USA
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ABSTRACT |
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Mammals express four highly conserved TEAD/TEF transcription factors that bind the same DNA sequence, but serve different functions during development. TEAD-2/TEF-4 protein purified from mouse cells was associated predominantly with a novel TEAD-binding domain at the amino terminus of YAP65, a powerful transcriptional coactivator. YAP65 interacted specifically with the carboxyl terminus of all four TEAD proteins. Both this interaction and sequence-specific DNA binding by TEAD were required for transcriptional activation in mouse cells. Expression of YAP in lymphocytic cells that normally do not support TEAD-dependent transcription (e.g., MPC11) resulted in up to 300-fold induction of TEAD activity. Conversely, TEAD overexpression squelched YAP activity. Therefore, the carboxy-terminal acidic activation domain in YAP is the transcriptional activation domain for TEAD transcription factors. However, whereas TEAD was concentrated in the nucleus, excess YAP65 accumulated in the cytoplasm as a complex with the cytoplasmic localization protein, 14-3-3. Because TEAD-dependent transcription was limited by YAP65, and YAP65 also binds Src/Yes protein tyrosine kinases, we propose that YAP65 regulates TEAD-dependent transcription in response to mitogenic signals.
[Key Words: TEAD; TEF; YAP; 14-3-3; transcription; Src]
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Introduction |
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Transcription enhancer factor-1 (TEF-1) was first
cloned in human cells as an activator of the simian virus 40 (SV40)
enhancer (Davidson et al. 1988
), and later recognized as a family of
four ubiquitous and highly conserved transcription factors found in mammals, birds, fungi, flies, and yeast (Kaneko and DePamphilis 1998
;
Jacquemin et al. 1998
). Because these proteins share in common the TEA
DNA binding domain, we refer to them as TEA domain (TEAD) proteins to
avoid ambiguity with acronyms for other proteins. At least one TEAD
gene is expressed in most adult tissues, and all four are abundantly
expressed in some tissues, such as lung (Yockey et al. 1996
; Kaneko et
al. 1997
). However, each protein exhibits different expression patterns
with respect to tissue and developmental stage specificity (Kaneko et
al. 1997
; Jacquemin et al. 1998
), suggesting that each protein has a
unique function. Moreover, disruption of the TEAD-1/TEF-1 gene prevents
heart biogenesis during mouse development, arguing that TEAD gene
functions are not redundant (Chen et al. 1994
). Although TEAD-1/TEF-1
is required for gene expression in cardiac muscle (Chen et al. 1994
;
Gupta et al. 1997
; Butler and Ordahl 1999
; Ueyama et al. 2000
),
TEAD-4/TEF-3 appears to play a specific role in activating skeletal
muscle genes (Jacquemin et al. 1996
; Yockey et al. 1996
). TEAD-3/TEF-5 is expressed primarily in the placenta (Jacquemin et al. 1998
; Jiang et
al. 1999
) and in cardiac muscle (Azakie et al. 1996
). TEAD-2/TEF-4 is
the only TEAD gene expressed in mouse embryos immediately after
fertilization and during the first seven days of development (Kaneko et
al. 1997
; Wang and Latham 2000
). Thus, TEAD-2/TEF-4 is one of the first
transcription factors expressed at the onset of zygotic gene expression
where it presumably plays a role in activating transcription of other
genes during preimplantation development.
All four TEAD proteins have virtually identical DNA binding domains
that recognize, with essentially the same affinity (Kaneko and
DePamphilis 1998
), a canonical M-CAT motif (5'-TCATTCCT-3') found in
promoters specific for transcription in muscle (Larkin et al. 1996
;
Jiang et al. 2000
). This motif is also found within the enhancers of
either wild-type SV40 or host range mutants of polyomavirus (PyV) that
can replicate in undifferentiated mouse embryonal carcinoma and
embryonic stem cells (Xiao et al. 1991
). These PyV mutant enhancers, as
well as one or more tandem copies of the M-CAT motif, can stimulate
promoter activity in early mouse embryos up to 600-fold (Martinez-Salas
et al. 1989
; Melin et al. 1993
), identifying TEAD-dependent enhancers
and promoters as important transcriptional control elements at the
beginning of mammalian development.
TEAD proteins appear to require a transcriptional coactivator, because
ectopic expression of TEAD-1 in cells that do not express TEAD proteins
does not elicit TEAD-dependent transcription, and overexpression of
TEAD-1 in cells that do express TEAD proteins results in repression of
transcription, consistent with titrating out (squelching) of a
coactivator activity (Xiao et al. 1991
; Jiang and Eberhardt 1996
).
Several candidates for this coactivator have been reported. TEAD-1 can
bind TATA-box binding protein (TBP) (Jiang and Eberhardt 1996
), and
TEAD-2 can bind a nuclear receptor coactivator protein (Belandia and
Parker 2000
), but the effects of these proteins on TEAD-dependent
transcription is only 2- to 3-fold. Similarly, MAX, a nuclear
phosphoprotein that forms a heterodimer with MYC, and poly(ADP-ribose)
polymerase, a chromatin bound protein, can also bind TEAD-1 and
stimulate expression of cardiac muscle specific genes 3- to 5-fold
(Gupta et al. 1997
; Butler and Ordahl 1999
). However, neither protein
has a transcriptional activation domain, and neither alone is
sufficient to activate TEAD-dependent transcription or to relieve
squelching. Perhaps the most promising candidate is TONDU, a mammalian
homolog of the Drosophila Vestigial (Vg) gene that interacts
specifically with all four TEAD proteins. Vg is a transcriptional
coactivator of Scalloped (Sd), a Drosophila protein that
contains the TEA DNA-binding domain and is required for wing formation.
TONDU can substitute for Vg in Drosophila, suggesting that
TONDU is a specific transcriptional coactivator of TEAD proteins in
tissues where it is expressed (Vaudin et al. 1999
), although this has
not been demonstrated. Thus, although it is clear that the action of
TEAD proteins can be modified by a variety of cellular proteins, none of the ones identified so far fill the role of a the putative, general
TEAD transcriptional coactivator.
In an effort to identify mammalian proteins that modify TEAD-2
activity, we expressed a tagged-mouse TEAD-2 protein in mouse cells and
then purified TEAD-2 protein complexes by affinity chromatography. The
advantage of this strategy is that it reveals the relative abundance of
each protein within a complex that has been assembled in vivo under
native conditions, and identifies all proteins that associate with the
tagged protein, regardless of whether they bind independently or in
concert with other proteins. The results revealed that TEAD-dependent
transcription by any one of the four TEAD proteins required a
transcriptional coactivator identified as YAP65 (abbreviated YAP), a
protein whose carboxyl terminus contains an acidic transcriptional
activation domain similar to that found in the herpesvirus VP16 protein
(Yagi et al. 1999
). Furthermore, TEAD activity was limited by the
intracellular level of YAP, accounting for previous reports of
squelching by TEAD proteins. Surprisingly, although TEAD was
concentrated in the nucleus, YAP was concentrated in the cytoplasm
where most of it was associated with a 14-3-3, a protein involved in
transporting its binding partner from the nucleus to the cytoplasm (Fu
et al. 2000
). Because YAP also binds membrane-associated PDZ domain
proteins and Src/Yes protein tyrosine kinases (Sudol 1994
) that are
components of signal transduction pathways, we propose that the
activity of TEAD transcription factors is regulated by release of its
cytoplasmic coactivator protein in response to mitogenic signals.
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Results |
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TEAD-2 protein complexes assembled in vivo
TEAD protein complexes were purified from mouse 3T3 cells by expressing an N-FLAG-hemaglutinin-[mouse TEAD-2] fusion protein (FH-TEAD-2) in vivo, and then purifying the FH-TEAD-2 protein by double immuno-affinity chromatography from cell extracts prepared in 100 mM KCl. First, anti-FLAG monoclonal antibody attached to agarose beads was used to isolate FLAG-tagged proteins by eluting the beads with FLAG peptide under nondenaturing conditions. Next the eluted proteins were further purified by immunoprecipitation using an anti-hemaglutinin peptide (anti-HA) monoclonal antibody attached to sepharose beads, and then eluted from the beads with the HA peptide under nondenaturing conditions. The proteins present at each step were fractionated by SDS-PAGE, and visualized by silver staining. The FH-TEAD-2 protein band was identified by its molecular weight and by immuno-blotting with anti-FLAG and anti-mTEAD-2 antibodies.
The results revealed that FH-TEAD-2 was associated tightly with 12 other polypeptides designated T1 to T12. These polypeptides were associated with FH-TEAD-2 protein recovered from cells expressing FH-TEAD-2 (Fig. 1A, lane 6), but not from control cells (Fig. 1A, lane 3), and they were associated with FH-TEAD-2 throughout both affinity purification steps (compare lanes 4, 5 and 6 in Fig. 1A). The anti-HA step efficiently eliminated most proteins that were not specifically retained by the anti-FLAG resin. Only those proteins found exclusively in the HA peptide eluate were considered specifically associated with FH-TEAD-2. For example, actin (42 kD) was found mostly in the flow-through fraction (Fig. 1A, lane 4), and it appeared in the HA peptide eluate from control cells (Fig. 1A, lane 3), suggesting that actin associated nonspecifically with the resins. The same complexes were isolated in 300 mM and 500 mM KCl extraction buffer, revealing that this collection of proteins were stably bound to FH-TEAD-2.
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To determine whether or not these proteins existed as more than one complex, the purified FH-TEAD-2 complex preparation was fractionated by sedimentation through a glycerol gradient (Fig. 1B). These results revealed the presence of three forms of FH-TEAD-2 protein. About 20% of the FH-TEAD-2 identified by anti-mTEAD-2 antibody (Fig. 1C) sedimented as monomeric TEAD protein (Fig. 1C, lanes 1,2) that was not apparently associated with other proteins. About 5% sedimented as a multiprotein complex containing all of the proteins in the initial FH-TEAD-2 complex preparation in approximately equimolar amounts (Fig. 1C, lanes 6-8). About 75% of the FH-TEAD-2 sedimented as a complex with proteins T1 and T2 (Fig. 1C, lanes 3,4), which were shown later to be product of a single gene. Thus, T1/T2 appeared to be the major partner of mTEAD-2 in vivo.
TEAD-2 associates in vivo with the transcriptional coactivator YAP
The identity of four TEAD-2-associated proteins was obtained by
using mass spectrometry to determine the molecular weights of parent
peptide and their fragments and then comparing them with those in the
NCBI nonredundancy protein and EST sequence databases. T8 was
identified as the multiple-PDZ-domain protein MUPP1, and the 42 kD band
was identified as actin on the basis of one MS/MS spectrum and the
MALDI/TOF spectrum for each protein. One MS/MS spectrum from T1 and one
from T2 corresponded to the YES kinase-associated protein, YAP, a
protein recently reported to act as a transcriptional coactivator (Yagi
et al. 1999
). The MALDI/TOF spectrums obtained for T1 and T2 were
virtually indistinguishable, and more than 10 tryptic peptides from
each band could be assigned to the same protein within a mass accuracy
of 20 ppm. This combination of peptide chromatography and mass
spectroscopic analysis ensured a high degree of confidence in the
identification (Fenyo et al. 1998
). Thus, T2 appears to be a
posttranslationally modified form of T1, most likely phosphorylated
(Sudol 1994
). Clear matches for the other nine TEAD-2 associated
proteins were not found, presumably because of the absence of data in
the available mouse sequence data bases.
The carboxy-terminal half of TEAD-2 is required to bind YAP
To determine which domain of TEAD-2 is required to bind YAP, the ability of various TEAD-2 deletion mutants to bind native YAP protein was determined in vitro. The glutathione-S-transferase (GST) gene was fused to the amino terminus of full length YAP, expressed in Escherichia coli and purified by immobilization on glutathione-sepharose. [35S]TEAD-2 proteins were synthesized in the presence of [35S]methionine using a coupled in vitro transcription/translation system. Similar amounts of each [35S]TEAD-2 protein (Fig. 2B, input) were analyzed for their ability to bind full-length GST-YAP protein in vitro, and fraction bound (Fig. 2B, bound) normalized against the binding of the full-length [35S]TEAD protein (Fig. 2A, % YAP binding). Deletions at virtually any site between amino acids 224 and 445 resulted in essentially complete loss of YAP binding. These deletions ranged from 16 to 139 amino acids. In contrast, deletion of 113 amino acids from the amino terminus (protein A) had no effect on binding, and deletion of amino acids 115 to 223 reduced binding by 43% (protein B). These data revealed that the carboxy-terminal 75% portion of TEAD protein (aa 115 to 445) was required to efficiently bind YAP protein.
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To determine whether or not this conclusion was an artifact of the experimental protocol used, the protocol was reversed: Amino-terminal GST-tagged TEAD-2 fragments were tested for their ability to bind full-length [35S]YAP (Fig. 2C). The results confirmed the deletion analysis. The carboxy-terminal half of TEAD-2 bound YAP, but the amino-terminal half did not (Fig. 2A,C, proteins R and S). In contrast, smaller fragments from the carboxy-terminal half had no affinity for YAP (proteins Q and P). The remarkable sensitivity of YAP:TEAD-2 binding for an intact TEAD-2 structure argues strongly for a highly specific TEAD:YAP interaction.
YAP binds all four mouse TEAD transcription factors
The YAP binding domain in mouse TEAD-2 is 79%-91% similar in sequence to the corresponding regions of the other three TEAD proteins, suggesting that YAP should bind specifically to all four TEAD proteins. To test this hypothesis, the same protein binding assay was repeated using 35S-labeled mouse TEAD proteins and full-length mouse GST-YAP. TEAD-1, -2, -3, and -4 each bound YAP with essentially the same efficiency (Fig. 3).
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YAP contains a novel TEAD-specific protein binding domain
To identify the protein domain in YAP that is responsible for
binding TEAD-2, the ability of various YAP protein fragments to bind
native TEAD-2 protein was determined in vitro as described above.
Various GST-YAP protein fragments were analyzed for their ability to
bind full-length [35S]TEAD-2 protein in vitro (Fig.
4B). The results revealed that amino acids
32-139 near the amino terminus of YAP were required for binding TEAD-2
(Fig. 4A). YAP fragments B, C, and D lacking this region failed to bind
TEAD-2, whereas YAP fragments A, L, and G containing all or most of
this region did bind TEAD-2. Several fragments containing only a
portion of this region bound poorly, but reproducibly, whereas
fragments F and I had higher binding activity. A 20 amino acid deletion
in the center of this region (
TEAD bd) eliminated binding activity.
These data revealed that TEAD-2 binds specifically to a novel YAP
protein domain at the opposite end from the YAP transcription
activation domain, and that this interaction likely involves spatial
relationships between specific amino acid residues.
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TEAD-dependent transcription in vivo requires YAP
To determine whether or not YAP is a transcriptional coactivator of
TEAD in vivo, four different mouse cell lineages were cotransfected
with a mixture of plasmids that expressed the firefly luciferase gene
driven by a TEAD-dependent promoter (pGT4Tluc), the indicated
HA-tagged mouse TEAD gene [pCI(H-TEAD)], the mouse YAP gene
[pSI(YAP)], and the E. coli
-galactosidase gene
[pRI(
gal)]. The level of luciferase enzyme activity was determined
by the amounts of TEAD and its putative coactivator, YAP, that were
provided either by the cell or by the corresponding expression vector. pRI(
gal) was included to correct for variation in transfection efficiency. The promoters for each gene were selected to minimize competition for the same set of transcription factors.
Blotting-hybridization with appropriate [32P]DNA probes
confirmed that 3T3 embryonic fibroblasts contain mRNA from YAP and all four TEAD genes (data not shown). When 3T3 cells were transfected with
pGT4Tluc in the absence of pCI(H-TEAD-2), the presence of pSI(YAP) stimulated luciferase production 
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This hypothesis was confirmed by carrying out the same experiment in EL4 T-lymphocytes that lacked YAP and TEAD mRNAs (data not shown). When EL4 cells were transfected with pGT4Tluc in the absence of pCI(H-TEAD-2), the presence of pSI(YAP) did not stimulate luciferase production. Therefore, YAP alone could not stimulate transcription from a TEAD-dependent promoter. However, addition of increasing amounts of pCI(H-TEAD-2) increased TEAD-dependant transcription up to 300-fold, but only in the presence of pSI(YAP) (Fig. 5). Therefore, YAP can function as a transcriptional coactivator for TEAD, even in cells that do not express either protein. Eventually, further addition of pCI(H-TEAD-2) began to reduce TEAD-dependant transcription, as the amount of intracellular TEAD presumably exceeded the amount of intracellular YAP.
To determine whether or not YAP was a transcriptional coactivator for
all four TEAD proteins, EL4 cells were transfected with a plasmid
expressing one of these genes, in the presence or absence of pSI(YAP).
In each case, YAP was required for TEAD-dependent expression of the
luciferase gene, and the extent of transcription among the four TEAD
proteins was similar (Fig. 6A). As
expected, sequence specific DNA binding of TEAD protein also was
required for TEAD-dependent transcription, because a mutant TEAD-3
protein with a single amino acid change in its DNA-binding domain that eliminated its ability to recognize its DNA binding site in vitro (Kaneko and DePamphilis 1998
) prevented luciferase expression (Fig.
6A). In addition, two YAP deletion mutants were tested for their
ability to stimulate luciferase production in EL4 cells. Deletion of
amino acids 77 to 96 from YAP, which eliminated binding to TEAD-2 (Fig.
4), also failed to stimulate transcription by TEAD-2 (Fig. 6B). In
contrast, mutation of amino acids 267 to 269, which disrupted the SH3
binding domain in YAP, diminished neither binding to TEAD-2 protein nor
stimulation of transcription by TEAD-2 (Fig. 6A).
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Previous studies have shown that TEAD-1 activates muscle-specific genes
in C2C12 muscle fibroblasts (Yockey et al. 1996
). These cells behaved
like 3T3 cells in that both cell lines exhibited endogenous TEAD
activity and both cell lines required a YAP protein with a functional
TEAD binding domain to stimulate TEAD-dependent transcription (Fig.
6B). Thus, YAP is utilized for TEAD-dependent transcription in muscle
as well as embryonic fibroblasts.
Previous studies also have shown that MPC-11 cells, which do not
express any of the TEAD genes (data not shown), do not support TEAD-dependent transcription even when TEAD-1 (Xiao et al. 1991
), -2, -3, or -4 (data not shown) are expressed ectopically, suggesting that
MPC-11 cells lack a necessary TEAD cofactor. As with EL4 T-lymphocytes,
MPC-11 B-lymphocytes required ectopic expression of both TEAD and a YAP
protein with a functional TEAD binding domain to elicit TEAD-dependent
transcription (Fig. 6B). Thus, YAP is capable of providing the
coactivator activity that is absent in MPC-11 cells.
The results described above showed that TEAD proteins interact specifically with YAP both physically and functionally. The proteins used here were active in vivo, and TEAD-dependent transcription in vivo required YAP protein with a functional TEAD binding domain as well as a TEAD protein with a functional DNA binding domain.
YAP protein complexes assembled in vivo contain TEAD/YAP dimers that bind TEAD-specific DNA sequence
To confirm the existence of TEAD/YAP complexes in vivo, FH-YAP was
expressed in 3T3 cells and purified, as described for FH-TEAD-2. As
expected, FH-YAP and FH-TEAD-2 were associated with the same proteins,
although the relative amounts of some of these proteins differed (Fig.
7A, cf. lanes 2 and 4).
T12 was absent from the YAP complex, and at least two new bands were
present in the YAP complex (Fig. 7A, Y1 and
). The mobility of the
bands was consistent with TEAD
proteins, but they were present in much lower amounts than FH-YAP, and
TEAD-2 was not detected by immuno-blotting. Nevertheless, TEAD proteins
could be detected in the FH-YAP complex by their ability to bind
specifically [32P]DNA containing the GT-IIC sequence (Fig.
7B, [32P]DNA TEAD-binding site). The GT-IIC sequence has
been shown to bind TEAD proteins specifically and to bestow
TEAD-dependent transcription to promoters and enhancers (Melin et al.
1993
; Larkin et al. 1996
; Jiang et al. 2000
).
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Affinity purified F-TEAD-2 monomer bound [32P]DNA containing the TEAD-specific DNA binding sequence, but not [32P]DNA containing the same sequence with a single base pair change that eliminates TEAD binding. In contrast, affinity purified [His]6-YAP monomer bound neither DNA fragment. When these proteins were mixed together, the GT-IIC sequence was bound specifically by a higher molecular weight complex, and this complex was present in both the FH-TEAD-2 and FH-YAP complexes. In the FH-TEAD-2 complex, both a [32P]DNA/TEAD band and a [32P]DNA/TEAD/YAP band were present in equal amounts, consistent with the distribution of FH-TEAD-2 protein between monomeric and dimeric forms (Fig. 1B). Addition of purified YAP to the FH-TEAD-2 complex shifted all of the FH-TEAD-2 into the dimeric complex, confirming the formation of a TEAD/YAP complex in vitro. In the FH-YAP complex isolated from 3T3 cells, two [32P]DNA/protein complexes were detected, one corresponding to [32P]DNA/TEAD-2 and a smaller molecular complex that presumably represents [32P]DNA/TEAD-1, -3, or -4 proteins. Therefore, the FH-YAP complex contained TEAD proteins.
TEAD and YAP are localized in different cellular compartments
TEAD proteins were present but underrepresented in purified YAP protein complexes, because YAP protein was concentrated in the cytoplasm, whereas TEAD proteins were concentrated in the nucleus. More than 85% of the FH-YAP protein was found in the cytoplasmic fraction when nuclei were isolated from 3T3 cells in 10 mM KCl buffer that did not contain a detergent (silver staining of PAGE analysis, data not shown). The remaining FH-YAP protein could be extracted from the nuclear pellet with 300 mM KCl and 0.1% NP-40. In contrast, only 25% of the FH-TEAD-2 protein was in the cytoplasmic fraction, whereas 75% was in the nuclear pellet.
This distribution was confirmed by immuno-fluorescence analysis of 3T3 cells expressing either FH-TEAD-2 or FH-YAP. The cellular distribution of FH-TEAD-2 (Fig. 8A) was indistinguishable from that of native TEAD-2 protein (Fig. 8E); both proteins were localized in the nuclei of interphase cells in a speckled pattern that excluded nucleoli. Anti-FLAG antibody did not stain nuclei that did not express FH-TEAD-2 (Fig. 8, arrow in panels A-C), whereas anti-TEAD-2 antibody stained all 3T3 cell nuclei. In contrast, FH-YAP was concentrated in the cytoplasm (Fig. 8D), consistent with its appearance in the cytoplasmic fraction of cell extracts. Thus, ectopically expressed FH-TEAD-2 colocalized with endogenous TEAD-2 in the nucleus, while its transcriptional coactivator, YAP, is localized in the cytoplasm. Not all cells in the population expressed FH-TEAD-2 (Fig. 8B, arrowhead). The intensity of anti-TEAD-2 staining of the nuclei in these cells was ~10-fold less, on average, than the nuclei in cells expressing FH-TEAD-2.
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The cytoplasmic localization of YAP together with the equimolar
presence of proteins of 30 to 32 kD in the purified FH-YAP complex
(Fig. 7A, lane 4) suggested that 14-3-3 protein, which is
involved in transporting proteins from the nucleus to the cytoplasm (Fu
et al. 2000
), may be a component of the FH-YAP complex. In fact,
immuno-blotting revealed that T10 was 14-3-3 (Fig. 7A, lane 5), and fractionation of the purified FH-YAP protein complex
by glycerol gradient sedimentation confirmed that most of the YAP protein existed as a complex with 14-3-3 and T11 (data not shown).
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Discussion |
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YAP is a general transcriptional coactivator for TEAD transcription factors
One or more members of the TEAD/TEF family of transcription factors have been implicated in the activation of specific genes at different stages throughout animal development, and their action appears to involve one or more cofactors that may serve to modify their activity. However, identification of the putative general coactivator for all TEAD proteins that is absent from lymphocytic cells has proven elusive. Here we confirm that TEAD-dependent transcription in mammalian cells requires a transcriptional coactivator, and identify this coactivator as YAP, a ubiquitous, powerful transcriptional coactivator with an acidic activation domain.
YAP contains a carboxy-terminal acidic activation domain (pI = 3.79)
that can activate transcription when tethered to a protein DNA-binding
domain (Yagi et al. 1999
). In this regard, YAP is equivalent to herpes
simplex virus VP16, which contains a similar acidic activation domain
(pI = 3.43), suggesting that YAP, like VP16, interacts directly with
components of the transcriptional machinery including TFIIB, TBP,
TFIIA, and TFIIH (Flint and Shenk 1997
). Thus, sequence-specific
DNA-binding proteins that bind YAP could utilize its activation domain
to initiate transcription. One example is PEBP whose PY motif binds to
one of the two WW domains (Fig. 4) in the amino-terminal half of YAP
(Yagi et al. 1999
). WW domains potentially can bind to the PY motif in other transcription factors such as c-Jun, AP-2, NF-E2, C/EBP alpha and PEBP2/CBF.
Here we show that the amino terminus of YAP also contains a novel 108 amino acid domain (Fig. 4) that binds all four members of the TEAD
family of transcription factors in vitro (Fig. 3) and in vivo (Fig. 6).
This domain is highly conserved; it is 91% identical to the same
sequence in human and chicken YAP proteins. Conversely, TEAD proteins
contain a conserved YAP binding domain that consists of the entire
carboxy-terminal half (332 amino acids) of TEAD proteins (Fig. 2).
Interaction between TEAD and YAP appears to be highly sensitive to the
3-dimensional structure of the TEAD protein, because all deletions
within this region eliminated binding activity, although none of the
smaller fragments from this region contained significant binding
activity. These results are quite similar to those obtained in
identifying the "transcriptional activation domain" (Fig. 2) for
TEAD-1-dependent transcription in vivo (Hwang et al. 1993
). Because
human and mouse TEAD-1 proteins are 99% identical, the same
transcriptional activation domain must exist in mTEAD-1. Because the
carboxy-terminal halves of human or mouse TEAD-1 and TEAD-2 proteins
are 71% identical, we conclude that the "transcriptional activation
domain" identified in TEAD-1 is actually the YAP binding domain
identified in TEAD-2 (Fig. 2). Thus, the real TEAD transcriptional
activation domain is the carboxy-terminal acidic domain in YAP.
Several pieces of evidence support this conclusion. First, the tagged forms of TEAD and YAP proteins used in these experiments consistently reflected the behavior of their native counterparts. The tagged proteins were localized in the same cellular compartments as their native counterparts, stimulated transcription in vivo using the same domains identified in vitro, and bound the native form of their cognate protein in vivo, regardless of their levels of expression. Similar results to those in Figure 1 were visible at ~5-fold less FH-TEAD-2 (data not shown). Second, TEAD proteins bound to a specific DNA sequence, while YAP protein neither interfered with TEAD binding to DNA nor exhibited any DNA binding of its own (Fig. 7B). Third, DNA/TEAD/YAP complexes of the same size were detected both in a mixture of purified TEAD and YAP proteins (Fig. 7B, lane 6), and in purified FH-TEAD and FH-YAP complexes purified from mouse cells (Fig. 7B, lanes 8, 11). Therefore, stable TEAD/YAP dimers exist in vivo that are capable of binding TEAD-specific DNA sequences, and TEAD can recruit YAP to specific promoters in vivo (Fig. 9). Fourth, formation of DNA/TEAD/YAP complexes was necessary for TEAD-dependent transcription in mouse cells, because TEAD-dependent transcription required both a TEAD protein with a functional DNA-binding domain, and YAP protein with a functional TEAD-binding domain (Figs. 5, 6). Thus, in vivo, TEAD and YAP proteins interacted functionally as well as physically. Whether or not other transcriptional coactivators can also serve this purpose remains to be determined.
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The data also suggest that YAP is the predominant, if not exclusive,
transcriptional activation domain for TEAD proteins. In the presence of
excess FH-TEAD-2 protein, the TEAD/YAP dimer constituted the major TEAD
complex in 3T3 cells (Fig. 1B). Moreover, YAP functioned as a
transcriptional coactivator for all four TEAD proteins (Fig. 6A), and
YAP supported TEAD-dependent transcription in different cell types,
regardless of whether or not YAP was already produced in these cells
(Fig. 6B). With the exception of lymphocytic cells, YAP is present in
both mouse and human tissues and in most cell types, from 2-cell
embryos (BLAST search of EST data bases), to adults (Sudol
et al. 1995
). This is consistent with the fact that TEAD-specific
transcription factor activity is first detected at the 2-cell stage in
mouse development, concomitant with expression of the TEAD-2 gene, and
that one or more TEAD genes are expressed in most tissues (Kaneko and
DePamphilis 1998
; Wang and Latham 2000
). One example is the requirement
of TEAD-1 for heart muscle development in the mouse, and expression of
muscle specific genes in mouse C2C12 muscle fibroblasts. The fact that YAP could bind to TEAD-1, stimulate TEAD-1 transcription activity, and
function in C2C12 cells strongly suggests that TEAD-1-dependent activation of muscle-specific genes is mediated by YAP. In human cells
that already express TEAD proteins, ectopic expression of TEADsquelches
TEAD-dependent transcription, because the excess TEAD protein titrates
out a required coactivator (Xiao et al. 1991
; Jiang and Eberhardt
1996
). This coactivator appears to be YAP, because ectopic expression
of YAP in mouse cells that already express TEAD proteins strongly
stimulates endogenous TEAD transcriptional activity, whereas ectopic
expression of additional TEAD protein titrates out the YAP activity
(Fig. 5, 3T3 cells). Taken together, these observations suggest that
YAP mediates TEAD function in most, if not all, mammalian cells.
Regulation of TEAD activity
A surprising feature of TEAD/YAP-dependent transcription activity is
that TEAD is localized in the nucleus, while its transcriptional coactivator is localized in the cytoplasm (Fig. 8). YAP has been shown
previously to bind to the Src/Yes protein tyrosine kinase family via
its SH3 binding domain (Sudol 1994
), and to a PDZ domain protein
(EBP50) that results in concentration of YAP at the apical membrane in
human epithelial cells (Mohler et al. 1999
). PDZ domains, consisting of
~90 amino acid residues, have been found in several proteins involved
in the assembly of protein signaling complexes on the membranes of
synaptic junctions (Garner et al. 2000
). Thus, the function of the PDZ
protein MUPP1 in the multimeric TEAD-2 protein complex (Fig. 1B) may be
to attach this complex to the plasma membrane. Because MUPP1 has 13 PDZ
domains, it potentially can bind 13 different proteins and thereby
serve as a scaffold on which PDZ binding proteins, such as YAP, can be
organized. The amount of either FH-TEAD-2 or FH-YAP multimeric protein
complex was too small to allow detection of Src protein. However, the fact that deletion of the SH3 binding domain in YAP did not affect its
ability to activate TEAD transcription factors in vivo (Fig. 6A), means
that YAP does not have to associate with this Src/Yes proteins to
activate nuclear transcription factors such as TEAD.
Overexpression of YAP resulted in the accumulation of a YAP/14-3-3/T11
complex in the cytoplasm. The 14-3-3 family of proteins bind a
multitude of functionally diverse signaling proteins, including kinases, phosphatases, and transmembrane receptors, and are involved in
shuttling these proteins out of the nucleus and thereby localizing them
in the cytoplasm (Fu et al. 2000
). The 31-kD T11 protein may also be a
member of this family, although it reacted only weakly with the
antisera we tested. Thus, the YAP/14-3-3 complex appears to represent
an intermediate between YAP/transcription factor complexes in the
nucleus and YAP/signal transduction complexes associated with the
plasma membrane. Moreover, accumulation of YAP/14-3-3 complexes in the
cytoplasm demonstrated that mammalian cells regulate the concentration
of YAP in their nucleus, and thereby regulate the activity of sequence
specific transcription factors such as TEAD that require YAP as a
transcriptional coactivator. Furthermore, the 14-3-3 binding domain in
TAZ, a transcriptional coactivator that shares homology with YAP,
requires phosphorylation of TAZ on a single serine residue (Kanai et
al. 2000
). This residue lies within the TEAD binding domain (Fig. 4),
suggesting that 14-3-3 and TEAD would compete for YAP binding.
Taken together, these observations suggest a regulatory pathway for transcriptional activity of TEAD and other proteins that utilize YAP as their transcription activation domain (Fig. 9). YAP, which is normally the rate-limiting factor for TEAD-dependent transcription, is sequestered at the plasma membrane by association with a PDZ-protein such as MUPP1 and by association with Src/Yes protein tyrosine kinases. Mitogenic signals (or ectopic expression) release YAP into the cytoplasm where it forms a complex with 14-3-3. YAP can then be transported into and out of the nucleus, where it forms a transcriptionally active complex with TEAD.
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Materials and methods |
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Cell culture
NIH/3T3 cells (ATCC CRL1658) were cultured in high glucose DMEM
supplemented with 7.5% calf serum, 4 mM glutamine and 1 mM sodium
pyruvate. EL4 (ATCC TIB39), MPC11 (ATTC CCL167), and C2C12 (ATTC
CRL1772) cells were cultured in high glucose DMEM supplemented with
10% FCS, 4 mM glutamine, 1 mM sodium pyruvate, and nonessential amino
acids. For EL4 and MPC11 cells, 0.05 mM
-mercaptoethanol was included.
Purification of tagged protein complexes assembled in vivo
A full-length mouse YAP open reading frame (ORF) was isolated from
a plasmid DNA containing an EST (GenBank Accession No. AW211560). YAP
was cloned into the multicloning site in pTIN, a modified version of
the Moloney murine leukemia virus (MMLV)-derived retroviral vector
pRetro-Off (Clontech). The puromycin resistance gene in pRetro-Off
vector was replaced in pTIN with the IL-2R
protein ORF to express
IL-2R
surface antigen constitutively under the control of 5'-LTR
viral promoter. The multicloning site in pRetro-Off was altered to
contain the sequence
ACCATGgactacaaggacgacgatgacaagCTCG ATGGAGGAtacccctacgacgtgcccgactacgccGGAGGACTCGAG-Y AP.
Translation began at a Kozak consensus sequence (underlined) followed
by sequences for the FLAG and hemaglutinin epitopes (lowercase)
separated by a linker. Amino-terminal- FH-YAP was expressed under the
control of a tetracycline-repressible promoter. Cells that were
transduced with pTIN were grown in the presence of 3 µg/ml
tetracycline to suppress expression of the cloned protein, and
expression of FH-YAP was induced by culturing cells in the absence of
tetracycline for 24 h, according to the Clontech protocol.
Mouse TEAD-2 gene (Kaneko and DePamphilis 1998
) was cloned into pOZ, a
MMLV derived retroviral vector (B. Howard, NIH, Bethesda, MD), upstream
of the IL-2R
ORF so that both genes were expressed from a
bi-cistronic mRNA. Translation of the cloned TEAD gene began at the
Kozak consensus sequence
[ACCATGgactacaaggacgacgatgacaagCTCGATGGAGGAtacccc tacgacgtgcccgactacgccGGAGGACTCGAG-TEAD-2],
while translation of the IL-2R
gene began at the IRIS sequence.
Several mouse cell lines were tested for their ability to stabile
express mouse TEAD or YAP proteins. 3T3 cells were transduced with
either pOZ or pTIN recombinant viruses using the Clontech protocol
described for pRetro-Off vector. Transduced cells expressing IL-2R
on their surface were collected by affinity cell sorting using
anti-ILR2
antibodies (UPSTATE Biotechnology) and Dynabeads according
to the manufacturer protocol (Dynal). Cells (107) expressing
IL-2R
were cultured to 90% confluence and then extracted for 30 min
with 200 µl buffer B100 (20 mM Tris-HCl at pH 7.9, 100 mM KCl, 5 mM
MgCl2, 10% glycerol, 0.1% Nonidet P-40, and 10 µM
leupeptin, 1 µM pepstatin, 1 µM PMSF, 0.5 µg/ml aprotinin). All
steps were carried out on ice or at 4°C. The extract was incubated with 2.5 µl M2 anti-FLAG agarose (Sigma) for 4 h with rotation. Beads
were washed in B100 and then bound proteins were eluted by incubation
for 1 h with 0.2 mg/ml FLAG peptide (Sigma) in B100 with rotation. The
eluate was incubated for 2 h with 2.5 µl protein A sepharose
(Pharmacia) that was coupled to 12CA5 anti-HA antibody (Roche) as
described previously (Harlow and Lane 1999
). The resin was washed with
B100, and then eluted by incubation for 1 h with 0.5 mg/ml HA peptide
(Roche) in buffer B100. The yield from 107 cells was 35 ng
FH-TEAD-2 or 80 ng FH-YAP protein.
For glycerol gradient sedimentation, 50 µl purified protein complex was placed on top of a 3.7 ml 10%-35% linear glycerol gradient in buffer B100 and centrifuged in a Beckman SW60 rotor (55,000 rpm for 3.5 h at 4°C).
Plasmids and antibodies
Full-length mouse TEAD gene sequences cloned into pOZ (see above)
were amplified together with their HA-tag using PCR and inserted into
pCI (Promega). Full-length YAP, as well as the indicated fragments
(Fig. 4), were generated by PCR and inserted into pBS-KSII+ (Stratagene), pTIN, pSI (Promega), or pGEX-6P-1 (Pharmacia) vectors. Deletions in the wild-type TEAD-2 and YAP sequences were generated by
PCR-based mutagenesis (Ausubel et al. 1997
). pGT4Tluc
contains the firefly luciferase gene driven by four tandem GT-IIC
sequences (Kaneko et al. 1997
), the TEAD DNA binding site found in
wild-type SV40, and PyV host range enhancers. PCI[H-TEAD-2] contains
the mouse H-TEAD-2 gene driven by the cytomegalovirus
intermediate-early promoter/enhancer. pSI(FH-mYAP) contains the mouse
YAP gene driven by the SV40 early gene promoter and enhancer.
pRI(
gal) contains the E. coli
-galactosidase gene
driven by the Rous Sarcoma Virus long terminal repeat. All
constructions were confirmed by DNA sequencing, and equivalent results
were obtained with at least two independent clones. Rabbit anti-mTEAD-2
polyclonal antibody was generated against a synthetic peptide (aa 2 to
14, [Kaneko et al. 1997
]).
Identification of proteins by mass spectrometry
The separated proteins in SDS-PAGE gel were visualized by the Colloidal Blue Staining (Novex). The bands of interest were excised, destained in 25 mM NH4HCO3 (pH 8) in methanol:water (1:1), cleared in water:acetonitrile:acetic acid (45:45:10, v/v/v)) for 20 h, swollen in water for 2 h, equilibrated with 20 µl 50 mM NH4HCO3, (pH 8) for 4 min, and then digested at 37 °C for 2 h with 0.2 µg trypsin (Roche sequencing grade). Tryptic peptides were extracted twice with 70% acetonitrile in water and concentrated in a speed vac. Each dried sample was dissolved in 6 µl of HPLC buffer A solution (water:acetonitrile:acetic acid, 97.5:2:0.5 [v/v/v]) for mass spectrometric (MS) analysis.
HPLC-MS/MS analysis was performed in a LCQ (Finnigan MAT) coupled
on-line with a capillary HPLC system (Eldex MicroPro syringe pumping
system). Two µl were loaded on capillary HPLC connected with a C18
column (5-10 cm length, 75 µm ID). Peptides eluted from the HPLC
column were sprayed directly from the tip of the capillary column to
LCQ mass spectrometer for MS analysis (Gatlin et al. 1998
). LCQ was
operated in a data-dependent mode where the machine measured intensity
of all peptide ions in the mass range 400 to 1400 (mass-to-charge
ratios) and isolated the peptide peak with the highest intensity for
collision-induced dissociation. Thus, masses of both the parent peptide
and its daughter ions were detected.
Molecular weights of tryptic peptides were also determined in a
matrix-assisted laser desorption ionization time of flight (MALDI-TOF)
mass spectrometer (Hillenkamp et al. 1991
) equipped with delay ion
extraction (Voyager STR, Perseptive Biosystems, Inc.). 0.8 µl of
peptide mixture and 0.8 µl of matrix solution (6 times dilution of
the saturated 2,5-dihydroxybensoic acid in ACN/H2O (1:1)
solution was mixed on a sample plate and dried at room temperature
prior to MS analysis. The best match between experimentally determined
masses of tryptic peptides and their fragments and theoretically
calculated masses for each tryptic peptide from proteins or ESTs
in the database were determined using PepFrag
(http://prowl1.rockefeller.edu/prowl/pepfragch.html) (Fenyo et al. 1998
).
Identification of protein-binding domains in vitro
TEAD-2 proteins were radio-labeled with [35S]-methionine using an in vitro coupled transcription/translation system (TnT Quick, Promega). GST-YAP proteins were expressed in E. coli using pGEX-6P1 vector (Pharmacia). GST-YAP protein was bound to glutathione-CL4B Sepharose (Pharmacia) as follows. All steps were at 4°C. Bacteria were extracted for 30 min with B100 (1 ml/10 culture) by vortexing with 200 µl of 600 micron glass beads (SIGMA) per ml. After centrifuging at 12,000xg for 30 min, the supernatant was incubated with glutathione-CL4B Sepharose for 1 h with rotation. After washing the beads with B100, the amount of bound GST protein was measured by subjecting them to SDS-PAGE along with bovine serum albumin standards, staining the proteins with Coomassie brilliant blue R-250, and quantifying protein bands by densitometry. Beads (2 µl) containing 200 ng of GST-YAP were incubated with 15 µl completed TnT Quick translation reaction for 30 min at 4°C in 100 µl B100 (final volume) containing 100 µg/ml BSA. After washing the beads with B100, the bound proteins were released by boiling in SDS sample buffer and fractionated by SDS-PAGE (NuPAGE gradient gel, Invitrogen). Proteins were stained with Coomassie brilliant blue R-250. The gel was dried, and 35S-labeled proteins were visualized by autoradiography, and quantified by densitometry. The amount of bound [35S]-TEAD protein was normalized against the amount of Coomassie stained GST-YAP in each sample.
TEAD-dependent transcription in vivo
Electroporation, luciferase, and
-galactosidase assays were
carried out as described previously (Kaneko and DePamphilis 2000
). Cells were transfected with a mixture of plasmid DNAs consisting of 10 µg pGT4Tluc, 10 µg pRI(
gal), 0 to 10 µg pCI(H-TEAD),
and where indicated, 10 µg pSI(YAP). The total amount of DNA was
adjusted to 40 µg with salmon sperm DNA in 20 µl final volume of TE
buffer. This DNA was mixed with 107 cells in 300 µl culture
medium and electroporated at 1180 µF and either 200 V (3T3 cells) or
250 V (EL4 cells). Cells were then cultured for 48 h before lysing them
in reporter lysis buffer (Promega) and quantifying the amounts of
luciferase and
-galactosidase activities in suitable aliquots.
Immunofluorescence
3T3 cells were fixed at 50%-70% confluence with methanol
(
20°C, 5 min) and incubated anti-FLAG M2 antibody (Sigma) and
anti-TEAD-2 rabbit serum followed by fluorochrome-conjugated secondary
antibodies (Jackson Immunoresearch) diluted in PBS containing 0.1 mg/ml Hoechst 33258 (Sigma) to visualize DNA. Images were taken using a
digital camera (Princeton Instruments) attached to a Nikon E600
photomicroscope equipped with epifluorescence optics using a 100× objective.
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Acknowledgments |
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We are indebted to Dr. Bruce Howard and members of our laboratory for providing the pOZ retroviral expression vector and for advising us on its application.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
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Footnotes |
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Received February 15, 2001; revised version accepted March 22, 2001.
2 Corresponding author.
E-MAIL depamphm{at}mail.nih.gov; FAX (301) 480-9354.
Article and publication are at www.genesdev.org/cgi/doi/10.1101/gad.888601.
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References |
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