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Vol. 17, No. 4, pp. 455-460, February 15, 2003
1 Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA; 2 Division of Hematology/Oncology, University of California at Los Angeles, School of Medicine, Los Angeles, California 90095, USA
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ABSTRACT |
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ISG15 is one of the most strongly induced genes upon viral
infection, type I interferon (IFN) stimulation, and lipopolysaccharide (LPS) stimulation. Here we report that mice lacking UBP43, a protease that removes ISG15 from ISGylated proteins, are hypersensitive to type
I IFN. Most importantly, in UBP43-deficient cells, IFN-
induces a
prolonged Stat1 tyrosine phosphorylation, DNA binding, and IFN-mediated
gene activation. Furthermore, restoration of ISG15 conjugation in
protein ISGylation-defective K562 cells increases IFN-stimulated
promoter activity. These findings identify UBP43 as a novel negative
regulator of IFN signaling and suggest the involvement of protein
ISGylation in the regulation of the JAK-STAT pathway.
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Introduction |
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|
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Interferons (IFNs) are important modulators of
immune, inflammatory, and antiviral functions, as well as cell survival
and proliferation (Stark et al. 1998
). They exert signals through the
activation of the JAK-STAT pathway that mediates rapid induction of
IFN-stimulated genes (ISGs; Darnell et al. 1994
; O'Shea et al. 2002
).
ISG15 (or UCRP) encodes a 15-kD protein which is strongly induced after
IFN treatment and has significant sequence homology to ubiquitin
(Blomstrom et al. 1986
; Haas et al. 1987
). ISG15 can also be conjugated
to intracellular proteins via an isopeptidase bond in a manner similar
to ubiquitin and other ubiquitin-like modifiers (ubls), SUMO and Nedd8.
In contrast to other ubls, ISG15 has not been found in lower organisms,
such as yeast, nematode, insects, and plants, indicating that it may be
associated with specialized functions in vertebrates. Protein
modification by ubiquitin, SUMO, and Nedd8 has been demonstrated to
play important roles in various cellular functions, including cell
cycle regulation, signal transduction, transcription, and antigen
presentation (Hochstrasser 2000
; Jentsch and Pyrowolakis 2000
; Hicke
2001
; Pickart 2001
). However, little is known about the function of
protein modification by ISG15 (ISGylation). Furthermore, despite the
obvious relevance of its role in IFN signaling, this function has not
been explored.
We previously cloned an ISG15-specific protease, UBP43 (USP18; Liu et
al. 1999
; Malakhov et al. 2002
), which belongs to the ubiquitin-specific protease (UBP or USP) family (Hochstrasser 1996
;
Wilkinson 1997
). UBP43 expression is strongly activated by IFN or
lipopolysaccharide (LPS) treatment (Zhang et al. 1999
; Li et al. 2000
,
2001
; Kang et al. 2001
; Malakhova et al. 2002
). In an effort to explore
the function of protein ISGylation, we generated UBP43 knockout mice
(Ritchie et al. 2002
). UBP43
/
mice were viable at birth but
gradually manifested neurological disorders associated with the
development of hydrocephalus (Ritchie et al. 2002
). Despite the potent
relevance of UBP43 to the development of the hematopoietic system (Liu
et al. 1999
), analyses of peripheral and bone marrow blood cells of
UBP43-null mice did not reveal any significant defect (data not shown).
Both UBP43 expression and conjugation of ISG15 are strongly induced by
IFN (Loeb and Haas 1992
; Li et al. 2000
), indicating that the level of
ISG15 conjugates is tightly controlled. We hypothesized that ISGylation may affect the cellular response to IFN. To test this hypothesis, we
studied the phenotype of UBP43 knockout mice in response to IFN
stimulation. Here, we report that UBP43-deficient cells are hypersensitive to type I IFN and undergo apoptosis upon IFN
stimulation. Lack of UBP43 activity results in a profound increase in
the level of protein ISGylation that is associated with the enhanced
and prolonged JAK-STAT signaling. Furthermore, the role of ISGylation in positive regulation of IFN signaling is also confirmed in
reconstitution assays of UBE1L-deficient K562 cells. These data suggest
that UBP43 may act as a negative feedback in the IFN-activated
signaling pathway by decreasing levels of protein ISGylation.
| |
Results and Discussion |
|---|
|
|
|---|
UBP43-null mice are hypersensitive to potent IFN inducer-poly I-C
Injection with synthetic double-stranded RNA, polyinosinic
acid-polycytidylic acid (polyI-C), has been commonly used to induce endogenous IFN production in mice (Kuhn et al. 1995
). Therefore, we
used polyI-C to assess the differences in response of UBP43
/
and
UBP43+/+ mice. After daily polyI-C injections, UBP43+/+
mice (n = 7) survived the course of treatment. In contrast, all
UBP43
/
mice (n = 7) died within 72 h posttreatment (Fig.
1A). We also analyzed the effect of polyI-C
treatment on hematopoietic cells. As shown in Figure 1B and C, UBP43+/+
mice responded to polyI-C by exhibiting a 20% decrease in number of
total peripheral white blood cells and a 30% decrease in total bone
marrow nucleated cells. A much stronger response was observed in
UBP43
/
mice. There were dramatic decreases (>90%) in the total
number of white blood cells in peripheral blood and nucleated cells in
bone marrow of the UBP43
/
mice. These results indicate that
UBP43-deficient mice are hypersensitive to polyI-C.
|
Hypersensitivity to IFN is intrinsic in UBP43-deficient hematopoietic cells
After birth, UBP43
/
mice gradually show defects associated
with the central nervous system. To confirm that the hypersensitivity of hematopoietic cells to IFN is not due to other metabolic and physiological defects in UBP43
/
mice, we performed bone marrow transplantation experiments. The UBP43
/
mice used in this study were initially generated by crossing 129 and C57BL/6 strains, and
back-crossing to the C57BL/6 strain. Therefore, their hematopoietic cells are CD45.2+. Lethally irradiated mice of C57/BL6 congenic strain
C57/B6.SJL PEP3b-BoyJ were used as recipients in the bone marrow
transplantation experiments to receive bone marrow cells from UBP43+/+
and UBP43
/
littermates. Hematopoietic cells of C57/B6.SJL
PEP3b-BoyJ mice express CD45.1 on their cell surface, and can be
distinguished from CD45.2 cells with the use of specific antibodies in
flow cytometric analysis. Four to six weeks after bone marrow
transplantation, mice generally recover and manifest normal levels of
hematopoietic cells. We performed bone marrow transplantation with
cells from four UBP43+/+ mice and four UBP43
/
mice into individual
C57/B6.SJL PEP3b-BoyJ mice. These mice were healthy after recovery from
lethal irradiation and bone marrow transplantation during the 6-mo
follow-up. Flow cytometric analysis showed that >60% of hematopoietic
cells were derived from either UBP43+/+ or UBP43
/
donor mice (Fig.
2A), indicating no significant difference
in the ability of these bone marrow cells to engraft. We then tested
the effect of polyI-C treatment on these mice. Figure 2A shows a
representative result from one mouse of each donor genotype. The
relative amount of CD45.2+ cells contributed by UBP43+/+ donor in the
peripheral blood did not change in response to polyI-C; however, a
significant decrease of CD45.2+ UBP43
/
cells was noted. Before
dosing, 79% of blood cells were UBP43
/
cells, whereas 48 h
postadministration, only 12% of blood cells were of the UBP43
/
genotype. These results demonstrate that the severe effect of polyI-C
treatment is intrinsic to UBP43-deficient hematopoietic cells.
|
Besides the activation of type I IFN production, polyI-C also activates
other signaling pathways related to viral infection (Kaufman 1999
). To
further investigate whether the hypersensitivity of UBP43
/
cells is
directly related to type I IFN stimulation, we performed in vitro bone
marrow cell colony forming unit (CFU) assays. The CFU assay is commonly
used to study defects of bone marrow cells in response to various
cytokines and growth factors. Type I IFN is known to suppress bone
marrow cell proliferation and colony formation (Broxmeyer et al. 1983
).
When equivalent numbers of UBP43+/+ and UBP43
/
bone marrow cells
were cultured under regular CFU assay conditions in the absence or
presence of 1000 units/mL IFN-
, UBP43+/+ bone marrow cells showed
only a 40% reduction in colony formation upon IFN stimulation, whereas UBP43
/
bone marrow cells formed no colonies at all (data not shown). Such a difference in colony formation clearly indicated an
abnormal sensitivity of UBP43-deficient cells to IFN-
. Further, this
sensitivity appeared to be dose-dependent: 50 units/mL of IFN-
resulted in an >80% reduction of UBP43
/
bone marrow colony numbers (Fig. 2B) as well as a marked decrease in colony size (data not
shown). Similar CFU assays using UBP43+/+ cells showed the appearance
of regular-sized colonies and a <10% reduction in colony number.
These results directly demonstrate the hypersensitivity of UBP43
/
cells to type I IFN stimulation. Furthermore, consistent with UBP43
enzymatic specificity (Malakhov et al. 2002
), a significantly higher
level of protein ISGylation was detected in UBP43
/
bone marrow
cells relative to UBP43+/+ bone marrow cells (Fig. 2C).
Augmented apoptosis of UBP43-deficient cells is specific to type I IFN stimulation
A number of previous studies showed a reduced number of cells
subsequent to IFN treatment (Stark et al. 1998
). The main reasons for
such decreases were explained by an IFN-mediated antiproliferative effect and/or apoptosis (Stark et al. 1998
). To determine whether the
hypersensitivity of UBP43-deficient bone marrow cells to IFN is
associated with augmented apoptosis, we conducted a TUNEL assay on
liquid bone marrow culture of UBP43+/+ and UBP43
/
cells following 48-h culture in the absence or the presence of 100 units/mL of IFN-
.
As presented in Figure 3A, the percentage
of apoptotic cells in UBP43+/+ bone marrow cell culture remained
constant with the addition of IFN-
. However, a significant increase
in the number of apoptotic cell was observed in UBP43
/
bone marrow cells. To confirm that the observed increase of apoptosis in UBP43
/
cells was due to a lack of UBP43, we also reintroduced UBP43 into UBP43
/
cells using a retroviral expression vector MigR1
(MSCV-IRES-EGFP; Pear et al. 1998
). Because UBP43 and EGFP were
translated from the same transcript, EGFP+ cells also ectopically
expressed UBP43. Compared to EGFP
cells, EGFP+ cells
(UBP43-expressing) displayed significantly reduced apoptosis upon
IFN-
treatment (Fig. 3B). MigR1 vector alone infection did not
rescue cells from IFN-induced apoptosis (data not shown). These results
demonstrate that an augmented rate of apoptosis correlates with the
hypersensitive response of UBP43-deficient cells to type I IFN.
|
In the next experiment we investigated whether other proapoptotic
cytokines could have a similar effect on UBP43
/
cells. TNF-
and
the type II IFN, IFN-
are commonly used to study bone marrow cell
growth and apoptosis and in the analysis of various knockout mouse
models. Therefore, we performed liquid bone marrow cell culture assays
to study the effect of TNF-
, IFN-
, and IFN-
on UBP43+/
and
UBP43
/
cells. As expected, IFN-
treatment resulted in a
substantial increase of apoptosis in UBP43
/
cells, whereas IFN-
and TNF-
did not cause a significant difference in cell death
between UBP43+/
cells and UBP43
/
cells (Fig. 3C). This result
indicates a specific role of type I IFN in the induction of apoptosis
in UBP43-deficient cells.
JAK-STAT signaling is extensively activated in UBP43-null cells upon IFN stimulation
Tremendous efforts have been made over the past years to
understand the molecular basis of IFN action. The binding of type I IFN
to its receptor leads to the activation of tyrosine kinases Jak1 and
Tyk2, and the subsequent recruitment and tyrosine phosphorylation of
Stat1 and Stat2 (Stark et al. 1998
; Levy 1999
; Ihle 2001
; O'Shea et
al. 2002
). Phosphorylated Stat1 and Stat2 associate with p48/IRF9 to
form a multimeric ISGF3 complex that plays an essential role in the
induction of ISG expression (Fu et al. 1990
; Darnell et al. 1994
).
Defective JAK-STAT signaling was found to cause either sensitivity or
resistance to IFN, confirming its absolute requirement for adequate
response to this cytokine. To further analyze the IFN-hypersensitivity
of UBP43-deficient cells, we asked whether increased protein ISGylation
in these cells alters type I IFN signaling. We therefore analyzed DNA
binding properties of ISGF3 complex in gel shift assays using protein
extracts prepared from UBP43+/+ and UBP43
/
bone marrow cells
following stimulation with IFN-
for a maximum of 48 h. In UBP43+/+
cells, ISGF3 DNA binding was rapidly and transiently induced upon
addition of IFN-
and became undetectable by 12 h of IFN-
stimulation (Fig. 4A). In contrast, strong
ISGF3 DNA binding was still detectable in protein extracts from
IFN-
-treated UBP43
/
cells at 48 h. Addition of antibodies
against Stat1 and p48 also supershifted the ISGF3 complex (data not
shown). Consistent with this observation, we identified prolonged Stat1
phosphorylation in UBP43
/
cells by Western blot using antibodies
specifically recognizing tyrosine-phosphorylated Stat1 (Fig. 4B). We
also evaluated the expression pattern of IFN target genes, including
ISG15, 2`-5'OAS, and IRF7 (Fig. 4C). Upon IFN-
stimulation of bone
marrow cells, the expression of these genes was clearly activated in
both UBP43+/+ and UBP43
/
cells. However, the level and the timing
of activation were much higher and extended in UBP43
/
cells
compared to UBP43+/+ cells. Indeed, not only was there a higher level
of protein ISGylation, but also an increase of free ISG15 was observed
in UBP43
/
cells upon IFN-
stimulation compared to controls (Fig.
2C). These results suggest that an augmented level of ISG15 conjugates
and/or the absence of their turnover in UBP43-deficient cells may
enhance and prolong the signaling of type I IFN.
|
Protein ISGylation enhances IFN signaling
We also analyzed the effect of protein ISGylation on IFN signaling
in additional assays. It was reported that K562 human leukemic cells do
not have protein ISGylation upon type I IFN treatment (Loeb and Haas
1992
). UBE1L is an ISG15-activating enzyme (E1) that is crucial for
ISG15 conjugation and was originally cloned from the study of
chromosome 3p deletion associated with small cell lung cancer (Kok et
al. 1993
; Yuan and Krug 2001
). We investigated whether missing
functional UBE1L was responsible for the lack of protein ISGylation in
K562 cells. HA-tagged UBE1L was transiently transfected into K562
cells. After culturing cells in the presence or absence of IFN-
for
24 h, protein extracts were subjected to Western blot analysis with
anti-ISG15 antibodies. UBE1L-expressing cells in contrast to controls
showed a strong induction of protein ISGylation (Fig.
5A). This result demonstrates that lack of
functional UBE1L expression is the major reason for the absence of
ISGylation upon IFN stimulation in K562 cells. To further analyze
whether protein ISGylation is involved in the enhanced and prolonged
IFN signaling as observed in UBP43-deficient cells, we cotransfected empty vector or UBE1L expression construct into K562 cells, together with luciferase reporter construct under the control of
interferon-responsive elements (ISRE; Malakhova et al. 2002
). The
luciferase activity in the absence of exogenous UBE1L expression
started to decline 24 h post-IFN-stimulation (Fig. 5B). In the presence
of exogenous UBE1L expression, significantly higher luciferase activity
was detected at all three time points measured, reaching the maximum by
48 h. These results further support the conclusion from the analysis in
UBP43-deficient cells that protein ISGylation enhances and prolongs
type I IFN signaling.
|
Two major cellular effects of IFN are the suppression of cell
proliferation and the promotion of apoptosis (Stark et al. 1998
). Here,
we report that ISG15 protease UBP43-deficient cells are hypersensitive
to type I IFN and undergo apoptosis upon IFN stimulation. Furthermore,
enhanced and prolonged IFN signaling is detected in UBP43-deficient
cells. Mechanisms responsible for the regulation of IFN signaling are
known to operate at several levels, including the negative controls by
down-regulation and degradation of receptors, and regulation of JAKs
and STATs by protein-tyrosine phosphatases (PTPs), SOCS, and PIAS
proteins (Greenhalgh and Hilton 2001
; O'Shea et al. 2002
; ten Hoeve et
al. 2002
). In the present study, we demonstrate that UBP43 is a novel
negative regulator of IFN signaling. Lack of UBP43 results in a
profound increase in the level of protein ISGylation that is
associated with the enhanced and prolonged type I IFN signaling.
Furthermore, the role of ISGylation in the regulation of IFN signaling
is also confirmed by transfection experiments in which reconstitution
of ISG15 conjugation system in UBE1L-deficient K562 cells increases
protein ISGylation and the activity of IFN-responsive promoter. These
data suggest that UBP43 negatively regulates the IFN-activated JAK-STAT
signaling pathway by decreasing levels of protein ISGylation. As shown
in Figure 2C, many proteins can be modified by ISG15. The enhanced IFN
signaling in UBP43-deficient cells may involve the increased ISGylation
of one or a group of proteins either directly or indirectly associated
with the JAK-STAT signaling pathway. Detailed biochemical studies are
needed to identify and characterize proteins modified by ISG15 to
understand how protein ISGylation controls the signaling pathway.
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Materials and Methods |
|---|
|
|
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PolyI-C injection and hematopoietic cell counting
PolyI-C (Sigma) was dissolved in phosphate buffered saline and intraperitoneally injected to mice at 5 µg/g body weight (gbw). Blood and bone marrow nucleated cells were counted in Türk solution (3% acetic acid and 0.01% crystal violet in H2O).
Bone marrow transplantation
Bone marrow cells (CD45.2+) were collected from UBP43+/+ and
UBP43
/
donor mice 5 d after they were injected with 5-fluoruracil (5-FU; Sigma) at 100 µg/gbw. C57/BL6 congenic strain C57/B6.SJL PEP3b-BoyJ (CD45.2
) recipient mice were lethally irradiated (1000 rads in a split dose separated by 4 h) using a Gamma irradiator (J.L.
Shepherd Model 143-45). A total of 1 × 106 bone marrow
cells from each individual donor mouse were injected intravenously into
each irradiated recipient. Transplanted mice were kept in sterilized
cages and fed with acidic water (pH 2.0) for 3 wk before going back to
regular care. The appearance of donor origin blood cells (CD45.2+) was
detected by flow cytometric analysis with fluorescence isothiocyanate
(FITC)-conjugated CD45.2 antibodies (BD Biosciences).
In vitro bone marrow cell culture
The colony forming unit (CFU) assay was performed as described
previously in the presence of the indicated concentration of IFN-
(Calbiochem; Rhoades et al. 2000
). Liquid culture of bone marrow cells
was performed in RPMI 1640 with 10% fetal bovine serum, 10 ng/mL IL-3
(Peprotech), 10 ng/mL IL-6 (Peprotech), and 100 ng/mL SCF (Peprotech)
in the presence or absence of 100 unit/mL IFN-
, 10 ng/mL IFN-
(Peprotech), or 10 ng/mL TNF-
(Calbiochem).
Apoptosis assay
The TUNEL assay was performed according to the manufacturer's instructions (Boehringer Mannheim). A total of 200 cells was counted to determine the percentage of apoptotic cells. An annexin V-PE/7-AAD (7-amino-actinomycin D) apoptosis assay was performed using an apoptosis detection kit according to the manufacturer's instructions (BD PharMingen).
Retroviral infection
UBP43 cDNA was subcloned into Bgl II and Hap I sites of MigR1.
The production of replication-defective retrovirus stock and bone
marrow cell infection was performed as described (Pear et al. 1998
).
Gel shift assay
Assays were performed as described (Malakhova et al. 2002
).
Double-stranded oligonucleotide from the ISG15 promoter that contains an ISGF3 binding site was used in the assay (Fu et al. 1990
).
Plasmid construction and transfection
UBE1L cDNA was kindly provided by Dr. Charles Buys (Kok et al.
1993
) and subcloned into pcDNA3 containing a 5' end HA tag sequence
generating pcDNA-HA-UBE1L. The UBP43 promoter-luciferase construct
p3K-UBP43-luc was described previously (Malakhova et al. 2002
).
Transfection of K562 cells was performed with electroporation (220 V,
975 µF). A total of 1 × 107 K562 cells were transfected
with p3K-UBP43-luc (4 µg), pcDNA3 or pcDNA-HA-UBE1L (6 µg), and
promoterless Renilla luciferase construct pRL-luc (200 ng) as an
internal control for transfection efficiency. Twenty-four hours after
the electroporation, cells were split into two flasks and cultured in
the presence or absence of 1000 units/mL IFN-
for the indicated
length of time. Luciferase activities were analyzed using the
Dual-Luciferase assay system (Promega).
Western blotting
Antibodies against phospho-Stat1Tyr701 (Cell Signaling), Stat1
(Santa Cruz), and HA (Babco) were purchased from the respective manufactures. Rabbit anti-mouse ISG15 polyclonal antibodies were generated using full-length mouse ISG15. Rabbit polyclonal antibodies against human ISG15 were generously provided by Dr. E. Borden (D'Cunha
et al. 1996
). Western blotting was performed as described (Malakhov et
al. 2002
).
Northern blotting
Total RNA was isolated using RNazol B reagent according to the manufacturer's instructions (TEL-TEST). Ten micrograms of total RNA from each sample was separated in an agarose/formaldehyde (0.22 M) gel, blotted on Hybond N+ membrane (Amersham), and probed with 32P-labeled cDNAs.
| |
Acknowledgments |
|---|
We thank Ernest Beutler, Juan Carlos de la Torre, and Herbert Virgin for critical reading of the manuscript. This work was supported by grants from the NIH and American Cancer Society. K.J.R. is a Skaggs Postdoctoral Fellow. D.E.Z. is a Leukemia and Lymphoma Society Scholar. The Stein Endowment Fund has partially supported the Departmental Molecular Biology Service Laboratory for DNA Sequencing and Oligonucleotide Synthesis. This is manuscript 15054-MEM from The Scripps Research Institute.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
| |
Footnotes |
|---|
[Keywords: ISG15; UBP43; knockout; interferon; STAT; JAK]
Received November 4, 2002; revised version accepted December 24, 2002.
3 These authors contributed equally to this work.
4 Corresponding author.
E-MAIL dzhang{at}scripps.edu; FAX (858) 784-9593.
Article published online ahead of print. Article and publication date are at http://www.genesdev.org/cgi/doi/10.1101/gad.1056303.
| |
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A. Osiak, O. Utermohlen, S. Niendorf, I. Horak, and K.-P. Knobeloch ISG15, an Interferon-Stimulated Ubiquitin-Like Protein, Is Not Essential for STAT1 Signaling and Responses against Vesicular Stomatitis and Lymphocytic Choriomeningitis Virus Mol. Cell. Biol., August 1, 2005; 25(15): 6338 - 6345. [Abstract] [Full Text] [PDF] |
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J. Narasimhan, M. Wang, Z. Fu, J. M. Klein, A. L. Haas, and J.-J. P. Kim Crystal Structure of the Interferon-induced Ubiquitin-like Protein ISG15 J. Biol. Chem., July 22, 2005; 280(29): 27356 - 27365. [Abstract] |